How to be Max: Difference between revisions
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Check out the ReadMe file for further details | Check out the ReadMe file for further details | ||
== Enumeration == | == Enumeration == | ||
Look at the | Look at the Google Docs guide for details about how to run Enumeration: | ||
* https://docs.google.com/document/d/1b5BvlcbFbhpbc3ZJQ3ehd1ussrMTcd2UyMEk7yXi58I/edit?usp=sharing | * https://docs.google.com/document/d/1b5BvlcbFbhpbc3ZJQ3ehd1ussrMTcd2UyMEk7yXi58I/edit?usp=sharing | ||
Look at the Google Sheets for details about previously run enumerations: | |||
*https://docs.google.com/spreadsheets/d/1MYvCNoIxxluvPR1J7eVogw68ESWIoCRMYSvWh9FnFwc/edit?gid=1892642148#gid=1892642148 | |||
== AB3 == | == AB3 == | ||
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* sudo docker container ls | * sudo docker container ls | ||
* sudo docker logs --since 30m ab3 | * sudo docker logs --since 30m ab3 | ||
==Chemistry Commons== | |||
*To restart, rerun the runner on gitlab.docking.org | |||
Ongoing bugs: | |||
*AB3 data send failure. | |||
== ZINC20 Loading == | == ZINC20 Loading == | ||
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== Covalent 3D Building == | == Covalent 3D Building == | ||
The built molecules are stored in: | |||
* /nfs/exk/copipeline | * /nfs/exk/copipeline | ||
Use this guide to run Covalent 3D Building: | |||
*https://wiki.docking.org/index.php?title=Covalent_Library_Preparation_2024 | |||
Revision as of 21:31, 15 July 2025
FE and Chemistry Commons
This is the directory in which all of Fe is located:
- /nfs/exj/Fe
Check out the ReadMe file for further details
Enumeration
Look at the Google Docs guide for details about how to run Enumeration:
Look at the Google Sheets for details about previously run enumerations:
AB3
- ssh epyc
Important commands
- sudo docker restart redis
- sudo docker restart ab3
- sudo docker container ls
- sudo docker logs --since 30m ab3
Chemistry Commons
- To restart, rerun the runner on gitlab.docking.org
Ongoing bugs:
- AB3 data send failure.
ZINC20 Loading
Covalent 3D Building
The built molecules are stored in:
- /nfs/exk/copipeline
Use this guide to run Covalent 3D Building: