How to be Max: Difference between revisions

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Check out the ReadMe file for further details
Check out the ReadMe file for further details
== Enumeration ==
== Enumeration ==
Look at the google docs guide for details about Enumeration:
Look at the Google Docs guide for details about how to run Enumeration:
* https://docs.google.com/document/d/1b5BvlcbFbhpbc3ZJQ3ehd1ussrMTcd2UyMEk7yXi58I/edit?usp=sharing
* https://docs.google.com/document/d/1b5BvlcbFbhpbc3ZJQ3ehd1ussrMTcd2UyMEk7yXi58I/edit?usp=sharing
 
Look at the Google Sheets for details about previously run enumerations:
*https://docs.google.com/spreadsheets/d/1MYvCNoIxxluvPR1J7eVogw68ESWIoCRMYSvWh9FnFwc/edit?gid=1892642148#gid=1892642148
== AB3 ==
== AB3 ==


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* sudo docker container ls
* sudo docker container ls
* sudo docker logs --since 30m ab3
* sudo docker logs --since 30m ab3
==Chemistry Commons==
*To restart, rerun the runner on gitlab.docking.org
Ongoing bugs:
*AB3 data send failure.


== ZINC20 Loading ==
== ZINC20 Loading ==
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== Covalent 3D Building ==
== Covalent 3D Building ==
The built molecules are stored in:
* /nfs/exk/copipeline
* /nfs/exk/copipeline
Use this guide to run Covalent 3D Building:
*https://wiki.docking.org/index.php?title=Covalent_Library_Preparation_2024

Revision as of 21:31, 15 July 2025

FE and Chemistry Commons

This is the directory in which all of Fe is located:

  • /nfs/exj/Fe

Check out the ReadMe file for further details

Enumeration

Look at the Google Docs guide for details about how to run Enumeration:

Look at the Google Sheets for details about previously run enumerations:

AB3

  • ssh epyc

Important commands

  • sudo docker restart redis
  • sudo docker restart ab3
  • sudo docker container ls
  • sudo docker logs --since 30m ab3

Chemistry Commons

  • To restart, rerun the runner on gitlab.docking.org

Ongoing bugs:

  • AB3 data send failure.

ZINC20 Loading

Covalent 3D Building

The built molecules are stored in:

  • /nfs/exk/copipeline

Use this guide to run Covalent 3D Building: