Welcome web user: Difference between revisions

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Welcome to our web pages. We hope you like them.
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= Services =
This wiki contains information for both members of the lab as well as the general public.
We offer many public services, including software and databases that are free to download. For software downloads, for-profit organizations are generally required to pay.
If you have arrived here, you have identified as not being a member of our lab.
That's ok, there is still lots of ways we can help you.
Many of our services and databases are available on the web.


* [http://dock.compbio.ucsf.edu DOCK] molecular docking software.  
Here is the model.
* [[ZINC]] database of commercially available compounds for ligand discovery and virtual screening.  
We have software that runs on our website.
* [[SEA]] - similarity ensemble approach for predicting the biological targets of small molecules
We have software that you can download and run on your own computer.  
* [[DOCK Blaster]] - free molecular docking website
We also have software that can be run in the cloud.  
* [[DUD]] and [[DUDE]] benchmarking databases for assessing molecular docking performance.
* [[Aggregator Advisor]] - all about small molecule colloidal aggregation and how to avoid it.
* [http://www.bkslab.org The lab web page]] including publications and information about lab members.
* This wiki, which contains documentation to which you may contribute.  


{{TOCright}}
All of our databases can be downloaded and hosted locally on your server. For example, [[ZINC20]] and [[ZINC22]].  
= Maintenance and Outages =
Our web interface to run software on our cluster is [[TLDR]].  Of course, since you are using our cluster, it won't be as fast as if you had it installed locally on your own system.  
Our servers are up all the time with rare exceptions. If we must perform maintenance, we will communicate this in advance via our blog http://docking.org and our twitter feed [https://twitter.com/chem4biology @chem4biology].  If there is an unscheduled outage, we will do our best to communicate this via twitter and the blog as soon as possible.  If our servers appear down or broken and we have not communicated this, we would be grateful to be told via support at docking.org or +(415) 937-1461


= Support =
== What can I not do if I am not a member of the lab ==  
If you have a problem or a question, we always like to hear about it. Please write on our blog http://docking.org or our facebook page http://facebook.com/zincdb where we or a member of the community will answer if we can.
* You cannot ssh in to our computers (but we have lots of free public websites!)
* you cannot run software on the command line (but we have TLDR and other websites that allow you to run software on our hardware
* you cannot access various services that are private to UCSF and/or the lab


= Privacy and Security =
We aim to keep confidential information such as passwords secure, but we offer no guarantees. You must use these services at your own risk.


[[Category:Tutorials]]
[[Category:FAQ]]
[[Category:Public]]
[[Category:Organization]]
[[Category:Navigation]]
[[Category:Needs work]]

Latest revision as of 23:25, 31 May 2024

This wiki contains information for both members of the lab as well as the general public. If you have arrived here, you have identified as not being a member of our lab. That's ok, there is still lots of ways we can help you. Many of our services and databases are available on the web.

Here is the model. We have software that runs on our website. We have software that you can download and run on your own computer. We also have software that can be run in the cloud.

All of our databases can be downloaded and hosted locally on your server. For example, ZINC20 and ZINC22. Our web interface to run software on our cluster is TLDR. Of course, since you are using our cluster, it won't be as fast as if you had it installed locally on your own system.

What can I not do if I am not a member of the lab

  • You cannot ssh in to our computers (but we have lots of free public websites!)
  • you cannot run software on the command line (but we have TLDR and other websites that allow you to run software on our hardware
  • you cannot access various services that are private to UCSF and/or the lab
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