Manage Lab Websites: Difference between revisions

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Line 35: Line 35:
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|Files2 (169.230.75.3)
|Files2 (169.230.75.3)
|Yes
|-
|-
|Covalent: http://covalent.docking.org/
|Covalent: http://covalent.docking.org/
Line 40: Line 41:
|
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|Tau (169.230.26.43, can not be moved to files2)
|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|-
|DSF: https://dsf.docking.org/
|DSF: https://dsf.docking.org/
Line 45: Line 47:
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|Tau (169.230.26.43)
|Tau (169.230.26.43)
|Yes
|-
|-
|Duc: https://duc.docking.org/
|Duc: https://duc.docking.org/
Line 50: Line 53:
|
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|Tau (169.230.26.43)
|Tau (169.230.26.43)
|No
|-
|Dud: https://dud.docking.org/
|
|
|Tau (169.230.26.43)
|showing wrong website
|-
|Dude18: http://dude18.docking.org/
|
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|Tau (169.230.26.43)
|No
|-
|Dude: http://dude.docking.org/
|
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|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|Dudez: http://dudez.docking.org/
|
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|Tau (169.230.26.43)
|Yes
|-
|Excipients: http://excipients.docking.org/
|
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|Files2 (169.230.75.3)
|Yes
|-
|Gitlab: https://gitlab.docking.org/
|
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|Tau (169.230.26.43)
|No
|-
|HG: https://hg.docking.org/
|
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|Tau (169.230.26.43)
|showing wrong website
|-
|-
|IrwinLab: http://irwinlab.compbio.ucsf.edu/
|IrwinLab: http://irwinlab.compbio.ucsf.edu/
Line 55: Line 101:
|Supervisord
|Supervisord
|Tau (169.230.26.43)
|Tau (169.230.26.43)
|Yes
|-
|Khanh: http://khanh.docking.org/
|
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|Tau (169.230.26.43)
|Yes
|-
|Metabolite: http://metabolite.docking.org/
|
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|Tau (169.230.26.43, can not be moved to files2)
|showing wrong website
|-
|Deepchemworkshop: http://deepchemworkshop.docking.org/
|
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|Tau (169.230.26.43)
|Yes
|-
|-
|Excipients, TLDR (formerly Tools18)
|Prices: http://prices.docking.org/
|gimel2 : port 8093, 5000  
|
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|Tau (169.230.26.43)
|No
|-
|Psicquic: http://psicquic.docking.org/
|
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|Tau (169.230.26.43)
|Yes (broken???)
|-
|Reactor: http://reactor.docking.org/
|
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|Tau (169.230.26.43)
|Yes
|-
|Transporters: http://transporters.ucsf.bkslab.org/
|
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|Tau (169.230.26.43)
|Yes
|-
|Sea16: http://sea16.docking.org/
|
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|Files2 (169.230.75.3)
|Yes
|-
|SEC: http://sec.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Smallworld Public: http://sw.docking.org/
|abacus:5020
|screen
|Files2 (169.230.75.3)
|Yes
|-
|Smallworld Private: http://swp.docking.org/
|abacus:8080
|screen
|Files2 (169.230.75.3)
|Yes
|-
|Smallworld Super Private: http://swc.docking.org/
|abacus:5099
|screen
|Files2 (169.230.75.3)
|Yes
|-
|Stats: http://stats.docking.org/
|
|
|Files2 (169.230.75.3)
|No
|-
|Symp: http://symp.docking.org/
|
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|Tau (169.230.26.43)
|No
|-
|TLDR http://tldr.docking.org/
|gimel2:5000  
|Supervisord
|Supervisord
|Tau (169.230.26.43)
|Yes
|-
|Tool-Selector: http://tool-selector.ucsf.bkslab.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|-
|Transportal
|Transportal
|omega : port 8123
|omega : port 8123
|screen
|screen
|Tau (169.230.26.43)
|Yes
|-
|-
|SEA
|SEA

Revision as of 00:15, 20 October 2020

List of Websites

Website Machine:Port Run on Hosted in (httpd/conf.d) Working
Amis: https://amis.docking.org/ Files2 (169.230.75.3) Yes
Arthor: https://arthor.docking.org/ n-1-136:8080 Tomcat Files2 (169.230.75.3) Yes
BKSLab: http://www.bkslab.org/ gimel:5002 Supervisord Tau (169.230.26.43) Yes
Blaster: https://blaster.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Cartblanche: https://cartblanche.docking.org/ Files2 (169.230.75.3) Yes
Covalent: http://covalent.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
DSF: https://dsf.docking.org/ Tau (169.230.26.43) Yes
Duc: https://duc.docking.org/ Tau (169.230.26.43) No
Dud: https://dud.docking.org/ Tau (169.230.26.43) showing wrong website
Dude18: http://dude18.docking.org/ Tau (169.230.26.43) No
Dude: http://dude.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Dudez: http://dudez.docking.org/ Tau (169.230.26.43) Yes
Excipients: http://excipients.docking.org/ Files2 (169.230.75.3) Yes
Gitlab: https://gitlab.docking.org/ Tau (169.230.26.43) No
HG: https://hg.docking.org/ Tau (169.230.26.43) showing wrong website
IrwinLab: http://irwinlab.compbio.ucsf.edu/ gimel:5004 Supervisord Tau (169.230.26.43) Yes
Khanh: http://khanh.docking.org/ Tau (169.230.26.43) Yes
Metabolite: http://metabolite.docking.org/ Tau (169.230.26.43, can not be moved to files2) showing wrong website
Deepchemworkshop: http://deepchemworkshop.docking.org/ Tau (169.230.26.43) Yes
Prices: http://prices.docking.org/ Tau (169.230.26.43) No
Psicquic: http://psicquic.docking.org/ Tau (169.230.26.43) Yes (broken???)
Reactor: http://reactor.docking.org/ Tau (169.230.26.43) Yes
Transporters: http://transporters.ucsf.bkslab.org/ Tau (169.230.26.43) Yes
Sea16: http://sea16.docking.org/ Files2 (169.230.75.3) Yes
SEC: http://sec.docking.org/ Tau (169.230.26.43) Yes
Smallworld Public: http://sw.docking.org/ abacus:5020 screen Files2 (169.230.75.3) Yes
Smallworld Private: http://swp.docking.org/ abacus:8080 screen Files2 (169.230.75.3) Yes
Smallworld Super Private: http://swc.docking.org/ abacus:5099 screen Files2 (169.230.75.3) Yes
Stats: http://stats.docking.org/ Files2 (169.230.75.3) No
Symp: http://symp.docking.org/ Tau (169.230.26.43) No
TLDR http://tldr.docking.org/ gimel2:5000 Supervisord Tau (169.230.26.43) Yes
Tool-Selector: http://tool-selector.ucsf.bkslab.org/ Tau (169.230.26.43) Yes
Transportal omega : port 8123 screen Tau (169.230.26.43) Yes
SEA gimel2 : port 6068 screen

Restart Instructions after UPS

For websites running on Screen

  • Become khtang on gimel
$ screen -ls

21546.SEA	(Detached)
23528.transportal	(Detached)
22877.conference	(Detached)
16132.upload	(Detached)
24786.oeb_lib_building	(Detached)
4796.ShopAppMol	(Detached)
19162.FASTROCS-server	(Detached)

$ screen -r <screen_id>

SEA

Become www on gimel2 

$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
$ make SEAserver-stop-devel
$ make all
$ make SEAserver-start-devel

Transportal

$ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
$ source venv/bin/activate.csh
$ python manage.py runserver 0.0.0.0:8123

For websites running on Supervisord

  • Become root on server the website runs on
$ supervisorctl status
$ supervisorctl restart <name>
  i.e 
$ supervisorctl restart bks-lab
$ supervisorctl restart tools18
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