Add Tools18 module: Difference between revisions
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Here is quick guide to add your script into [[Tools18]] interface | Here is quick guide to add your script into [[Tools18]] interface | ||
=== Scripts === | === Scripts === | ||
=== Add job type into psql table === | === Add job type into psql table === | ||
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Example: | Example: | ||
blaster=> begin; insert into job_types values(16, now(), 'shape'); | blaster=> begin; insert into job_types values(16, now(), 'shape'); | ||
=== Creating Template === | |||
This is recommend that you go though all the currently existing modules on [http://tools18.docking.org/start Tools18] and reuse instead of starting one from scratch. | |||
=== Test run! === | === Test run! === |
Revision as of 23:46, 21 March 2019
Here is quick guide to add your script into Tools18 interface
Scripts
Add job type into psql table
- Access the database
$ psql -h mem blaster blasteruser
- Look for the next available index on job_types table
blaster=> select * from job_types order by job_type_id; You will see table like this job_type_id | last_updated | short_name -------------+----------------------------+------------------- 1 | 2018-10-05 00:00:00 | analog 2 | 2018-10-05 00:00:00 | blaster 3 | 2018-10-05 00:00:00 | blasterpdb 4 | 2018-10-05 00:00:00 | build2d 5 | 2018-10-05 00:00:00 | build3d 6 | 2018-10-05 00:00:00 | cluster 7 | 2018-10-05 00:00:00 | covalent 8 | 2018-10-05 00:00:00 | dude 9 | 2018-10-05 00:00:00 | libanalysis 10 | 2018-10-05 00:00:00 | reaction 11 | 2018-10-05 00:00:00 | sea 12 | 2018-10-05 00:00:00 | threec 13 | 2018-10-05 00:00:00 | transform 14 | 2018-10-05 00:00:00 | zincbatch 15 | 2018-12-01 18:47:34 | cluster_molecules
- Insert new job type (Please be extra careful when doing this step)
This is important to start command with 'begin;' so that if any syntax mistakes could be undo. blaster=> begin; insert into job_types values(<next_available_id>, now(), '<your_job_name>'); Example: blaster=> begin; insert into job_types values(16, now(), 'shape');
Creating Template
This is recommend that you go though all the currently existing modules on Tools18 and reuse instead of starting one from scratch.