Substructure searching: Difference between revisions

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The hierarchy of the directories:
The hierarchy of the directories:


  thin_spheres_parameter_scanning----- working  
  substructure_searching----- working  
                                                                |
              |                |
                                                                |------ ZINC-downloader-2D-smi.database_index
              |                |------ ZINC-downloader-2D-smi.database_index
               |                                                 |  
               |               |  
               |                                                 |------ sub_pattern.smarts
               |               |------ sub_pattern.smarts
               |                                                 
               |                                                 
               |                                                 
               |                                                 
Line 20: Line 20:
                               |
                               |
                               |------ setup_substructure_searching_files.py
                               |------ setup_substructure_searching_files.py
1) Make those directories above.
mkdir substructure_searching
cd substructure_searching
mkdir working
mkdir script

Revision as of 17:44, 13 September 2017

Written by Jiankun Lyu, 2017/09/13

The hierarchy of the directories:

substructure_searching----- working 
              |                |
              |                |------ ZINC-downloader-2D-smi.database_index
              |                | 
              |                |------ sub_pattern.smarts
              |                                                 
              |                                                 
              |
              ------- script ------ submit.csh
                              |
                              |------ submit_sub_search.csh
                              |
                              |------ run_sub_search.csh
                              |
                              |------ search_multi_substructures.py
                              |
                              |------ setup_substructure_searching_files.py

1) Make those directories above.

mkdir substructure_searching
cd substructure_searching
mkdir working
mkdir script