Showbox - Revision history

Frodo at 22:32, 12 March 2014

2014-03-12T22:32:42Z

← Older revision		Revision as of 22:32, 12 March 2014
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	Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.		Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.

	~~[[Category:DOCK Tools]]~~
	[[Category:DOCK]]		[[Category:DOCK]]

Therese: 3 revisions

2012-10-08T20:32:24Z

3 revisions

← Older revision	Revision as of 20:32, 8 October 2012
(No difference)

Frodo: categories

2010-03-18T16:43:11Z

categories

← Older revision		Revision as of 16:43, 18 March 2010
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	Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.		Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.

			[[Category:DOCK Tools]]
			[[Category:DOCK]]

Rgc: fixing formatting

2010-03-15T22:08:06Z

fixing formatting

← Older revision		Revision as of 22:08, 15 March 2010
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	3.5. Showbox		3.5. Showbox

	AUTHOR: Elaine Meng		AUTHOR: Elaine Meng

	USAGE: showbox [< input.in]		USAGE: showbox [< input.in]

	DESCRIPTION:		DESCRIPTION:

	Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.		Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.

JohnIrwin at 23:07, 19 September 2006

2006-09-19T23:07:35Z

New page

3.5. Showbox

AUTHOR: Elaine Meng

USAGE: showbox [< input.in]

DESCRIPTION:

Showbox is an interactive program that allows visualization of the location and size of the grids that will be calculated by the program grid , using any graphics program that can display PDB format. The user is asked whether the box should be automatically constructed to enclose all of the spheres in a cluster. If so, the user must also enter a value for how closely the box faces may approach a sphere center (how large a cushion of space is desired) and the sphere cluster filename and number. If not, the user is asked whether the box will be centered on manually entered coordinates or a sphere cluster center of mass. Depending on the response, the coordinates of the center or the sphere cluster filename and number are requested. Finally, the user must enter the desired box dimensions (if not automatic) and a name for the output PDB-format box file. If the input parameters are known, they can be listed in an input file and piped into the program.