http://wiki.docking.org/index.php?action=history&feed=atom&title=Reactome_integrationReactome integration - Revision history2026-04-08T13:53:24ZRevision history for this page on the wikiMediaWiki 1.39.1http://wiki.docking.org/index.php?title=Reactome_integration&diff=9557&oldid=prevFrodo: aasdf2016-09-06T14:11:01Z<p>aasdf</p>
<p><b>New page</b></p><div><br />
For looking at the small molecules currently released in Reactome, you can look at this page: <br />
http://www.reactome.org/content/schema/objects/ReferenceMolecule<br />
The vast majority of our small molecules use ChEBI as a reference although we do occasionally reference COMPOUND, PubChem. <br />
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At the moment, all our information regarding which of our proteins/genes are targetable and the subset of our small molecules that target something comes from cross-references to ZINC. You can see the ZINC cross-references to small molecules here:<br />
http://www.reactome.org/cgi-bin/instancebrowser?DB=gk_current&ID=9642001&<br />
and the ZINC cross-references to protein targets here:<br />
http://www.reactome.org/cgi-bin/instancebrowser?DB=gk_current&ID=9643251&<br />
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Antonio and the guys at EBI have also been working on making a graph database version of Reactome available for direct querying: <br />
http://www.reactome.org/pages/documentation/developer-guide/graph-database/<br />
Unfortunately, we don’t have direct target associations between small molecules and genes in Reactome, but in some cases it may be possible to pull information from looking at reactions that involve them.<br />
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[[Category:Curator]]</div>Frodo