http://wiki.docking.org/index.php?action=history&feed=atom&title=Protein-Protein_Docking 2026-04-05T11:04:19Z Revision history for this page on the wiki MediaWiki 1.39.1 http://wiki.docking.org/index.php?title=Protein-Protein_Docking&diff=6165&oldid=prev 2014-02-15T17:41:38Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:41, 15 February 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l19">Line 19:</td> <td colspan="2" class="diff-lineno">Line 19:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   renum.pl - renumber atoms prior to asp.com  </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   renum.pl - renumber atoms prior to asp.com  </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   (ccp4:pdbset to remove H atoms for asp.com)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   (ccp4:pdbset to remove H atoms for asp.com)</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Obsolete]]</ins></div></td></tr> <!-- diff cache key wikidb:diff::1.12:old-4170:rev-6165 --> </table>

Frodo http://wiki.docking.org/index.php?title=Protein-Protein_Docking&diff=4170&oldid=prev 2012-10-08T20:31:22Z

<p>1 revision</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:31, 8 October 2012</td> </tr> <!-- diff cache key wikidb:diff::1.12:old-4169:rev-4170 --> </table>

Therese http://wiki.docking.org/index.php?title=Protein-Protein_Docking&diff=4169&oldid=prev 2006-09-21T18:10:53Z

<p></p> <p><b>New page</b></p><div>Scripts for using protein protein docking<br /> <br /> <br /> fitatom.exe - A McLachlan&#039;s program bks 1996<br /> maksph - jji code to make focusing spheres from main spheres for protein work<br /> <br /> access - toolbox originally from Tim Richmond for computing surface exposure<br /> compiled as SGI binaries<br /> asp.com - compute exposed residues as a basis for sampling by flex-prot.csh<br /> dcom - protein OUTDOCK analysis<br /> dcom_mut - dcom for mutants<br /> flex-prot.csh - generate base docking database from mol2 and exp60<br /> prot2hier - called by flex-prot.csh<br /> protein_c.com - called by flex-prot.csh<br /> protein_c.sed - called by protein_c.com<br /> protein.spl - use from sybyl to make mol2 from pdb of protein<br /> scripts/ - flex-prot.spl &amp; prot.table.dml - used by flex-prot.csh<br /> syb_isdone - called by flex-prot.csh<br /> renum.pl - renumber atoms prior to asp.com <br /> (ccp4:pdbset to remove H atoms for asp.com)</div>

Frodo