Official file locations - Revision history

Frodo: asdf

2021-05-03T23:20:01Z

asdf

← Older revision		Revision as of 23:20, 3 May 2021
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	Also mirrored on AWS.		Also mirrored on AWS.

			/nfs/exe/2d/ - raw smiles from vendors. (used to be in /nfs/db5/2d/)

	= By Topic =		= By Topic =

Frodo: asdf

2021-05-03T22:40:24Z

asdf

← Older revision		Revision as of 22:40, 3 May 2021
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	This document describes where files live, officially, on the cluster.		This document describes where files live, officially, on the cluster.

	= ~~Who is responsible for these?~~ =		= Lost and found =
	Are ~~they current? do we still need them~~?		Are these needed?
	/mnt/nfs/exc/zinc22/dude-xtract		/mnt/nfs/exc/zinc22/dude-xtract

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	/nfs/exb/zinc22/tarballs - raw 50-mer tarballs Aug 26, 2020 to May 2021. location 1		/nfs/exb/zinc22/tarballs - raw 50-mer tarballs Aug 26, 2020 to May 2021. location 1
	/nfs/exc/zinc23/tarballs - raw 50-mer tarballs Mar 30, 2021 to June 2021. location 2.		/nfs/exc/zinc23/tarballs - raw 50-mer tarballs Mar 30, 2021 to June 2021. location 2.
			/nfs/exe/zinc23/tarballs - raw 50-mer tarballs July 2021 to Dec 2021. location 3.
	/nfs/exd/zinc22/tarballs - copy (mirror) of location 1		/nfs/exd/zinc22/tarballs - copy (mirror) of location 1
	/nfs/exe/zinc22/tarballs - copy (mirror) of location 2		/nfs/exe/zinc22/tarballs - copy (mirror) of location 2
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	/wynton/group/bks/zinc-22?/ - copy (mirror) or locations 1,2,3		/wynton/group/bks/zinc-22?/ - copy (mirror) or locations 1,2,3
	Also mirrored on AWS.		Also mirrored on AWS.

	~~We have too many old copies of files. The intent is that we use this document to control the official location of files.~~

	= By Topic =		= By Topic =

Frodo: asdf

2021-05-03T22:25:46Z

asdf

← Older revision		Revision as of 22:25, 3 May 2021
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	This document describes where files live, officially, on the cluster.		This document describes where files live, officially, on the cluster.

			= Who is responsible for these? =
			Are they current? do we still need them?
			/mnt/nfs/exc/zinc22/dude-xtract

			- Backups =
			/nfs/exc/zinc22/psql-backups - TIN database backups
			/nfs/exc/backups/ - infrastructure backups
			/nfs/exc/bet - bet backups

			= By disk =
			== 50-mer tarballs ==
			/nfs/exb/zinc22/tarballs - raw 50-mer tarballs Aug 26, 2020 to May 2021. location 1
			/nfs/exc/zinc23/tarballs - raw 50-mer tarballs Mar 30, 2021 to June 2021. location 2.
			/nfs/exd/zinc22/tarballs - copy (mirror) of location 1
			/nfs/exe/zinc22/tarballs - copy (mirror) of location 2
			/nfs/exf/zinc22/tarballs - copy (mirror) of location 3
			== 5000-mer tarballs ==
			/nfs/exd/zinc-22?/ - 5000-mer tarballs, location 1. t-x
			/nfs/exc/zinc-22?/ - 5000-mer tarballs, location 2. h-s
			/nfs/exe/zinc-22?/ - 5000-mer tarballs, location 3. a-g
			/wynton/group/bks/zinc-22?/ - copy (mirror) or locations 1,2,3
			Also mirrored on AWS.

	We have too many old copies of files. The intent is that we use this document to control the official location of files.		We have too many old copies of files. The intent is that we use this document to control the official location of files.

Frodo: asdf

2020-08-04T16:49:53Z

asdf

← Older revision		Revision as of 16:49, 4 August 2020
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	We have too many old copies of files. The intent is that we use this document to control the official location of files.		We have too many old copies of files. The intent is that we use this document to control the official location of files.

	= ~~Organized by~~ Topic =		= By Topic =

	== ~~Where do we keep~~ SMILES ~~of big databases~~ ==		== 2D SMILES ==
	/nfs/exb/rawsmiles/		/nfs/exb/rawsmiles/

	== ~~Where do I look for dockable ZINC22~~ ==		== 3D ==
	/nfs/exa/zinc22/3D		/nfs/exa/zinc22/3D

			= By Location =
	=~~= Where do I look for 2D SMILES of ZINC22 ==~~
	~~/nfs/exa/zinc22/2D~~

	~~= Organized by~~ Location =



	{\| class="wikitable"		{\| class="wikitable"

Frodo: asdf

2020-07-24T03:56:13Z

asdf

← Older revision		Revision as of 03:56, 24 July 2020
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	= Organized by Location =		= Organized by Location =



			{\| class="wikitable"
			\|-
			! disk !! what !! notes
			\|-
			\| db2 \|\| SSD 76TB /124TB \|\| fine tranches, smallworld
			\|-
			\| db3 \|\| SSD 118TB / 124 TB \|\| work
			\|-
			\| db5 \|\| SSD 124TB / 124TB \|\| smiles, zinc22
			\|-
			\| ex9 \|\| asdfasdf \|\| lots
			\|-
			\| exa \|\| qwer34 \|\| lots
			\|-
			\| exb \|\| 275 TB / 275 TB \|\| zinc22 tarballs
			\|-
			\| exc \|\| 275 TB / 275 TB \|\| zinc22 dockable
			\|-
			\| exd \|\| 275 TB / 275TB \|\| consolidate ex1-ex8
			\|}


	== /nfs/exb/zinc22 ==		== /nfs/exb/zinc22 ==

Frodo: first version not ready yet.

2020-07-22T22:53:16Z

first version not ready yet.

New page

This document describes where files live, officially, on the cluster.

We have too many old copies of files. The intent is that we use this document to control the official location of files.

= Organized by Topic =

== Where do we keep SMILES of big databases ==
/nfs/exb/rawsmiles/

== Where do I look for dockable ZINC22 ==
/nfs/exa/zinc22/3D

== Where do I look for 2D SMILES of ZINC22 ==
/nfs/exa/zinc22/2D

= Organized by Location =

== /nfs/exb/zinc22 ==
This is where 3D databases of ZINC22 live. Within
* The raw tarballs go in /nfs/exb/zinc22/tarballs/
* 2D SMILES go

== /nfs/exc/dock/zinc22 ==
This is where the dockable version of zinc22 lives.
It is organized by fine tranche HxxPyyy