<?xml version="1.0"?>
<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en">
	<id>http://wiki.docking.org/index.php?action=history&amp;feed=atom&amp;title=Nailgun</id>
	<title>Nailgun - Revision history</title>
	<link rel="self" type="application/atom+xml" href="http://wiki.docking.org/index.php?action=history&amp;feed=atom&amp;title=Nailgun"/>
	<link rel="alternate" type="text/html" href="http://wiki.docking.org/index.php?title=Nailgun&amp;action=history"/>
	<updated>2026-04-09T21:18:34Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
	<generator>MediaWiki 1.39.1</generator>
	<entry>
		<id>http://wiki.docking.org/index.php?title=Nailgun&amp;diff=12322&amp;oldid=prev</id>
		<title>Frodo: capture nailgun info</title>
		<link rel="alternate" type="text/html" href="http://wiki.docking.org/index.php?title=Nailgun&amp;diff=12322&amp;oldid=prev"/>
		<updated>2020-03-18T20:52:01Z</updated>

		<summary type="html">&lt;p&gt;capture nailgun info&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;&amp;lt;pre&amp;gt;&lt;br /&gt;
 installed Nailgun on the cluster.&lt;br /&gt;
I did the following in /nfs/home/stefan/NAILGUN/nailgun-master&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
1) Install with maven &lt;br /&gt;
&lt;br /&gt;
$ /nfs/home/stefan/NAILGUN/apache-maven-3.6.3/bin/mvn clean install&lt;br /&gt;
&lt;br /&gt;
Since we have Java 1.8 on the cluster, the Build worked out.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
2) This is what we&amp;#039;ve been missing so far: We need to generate a class path containing the server and the classes we want to run with nailgun:&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
$ export CLASSPATH=&amp;quot;/nfs/home/stefan/NAILGUN/nailgun-master/nailgun-server/target/classes:/nfs/home/stefan/NAILGUN/nailgun-master/nailgun-examples/target/classes:/nfs/soft/jchem/jchem-19.15/lib/*&amp;quot;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
3) Start the server:&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
$ java com.facebook.nailgun.NGServer &amp;amp; &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
4) Now you can run the classes with the nailgun client&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
./nailgun-client/target/ng com.facebook.nailgun.examples.HelloWorld&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Just as an example that this actually is faster as compared to &amp;quot;classic&amp;quot; java:&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Classic Java&lt;br /&gt;
&lt;br /&gt;
$ time java com.facebook.nailgun.examples.HelloWorld&lt;br /&gt;
&lt;br /&gt;
Hello, world!&lt;br /&gt;
&lt;br /&gt;
real	0m1.794s&lt;br /&gt;
&lt;br /&gt;
user	0m0.336s&lt;br /&gt;
&lt;br /&gt;
sys	0m1.414s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Nailgun&lt;br /&gt;
&lt;br /&gt;
$ time ./nailgun-client/target/ng com.facebook.nailgun.examples.HelloWorld&lt;br /&gt;
&lt;br /&gt;
Hello, world!&lt;br /&gt;
&lt;br /&gt;
real	0m0.025s&lt;br /&gt;
&lt;br /&gt;
user	0m0.001s&lt;br /&gt;
&lt;br /&gt;
sys	0m0.005s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
So it seems to speed up things.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
As for Jchem, I don&amp;#039;t know why it works, but it does :)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Normal execution of cxcalc&lt;br /&gt;
&lt;br /&gt;
$ time cxcalc&lt;br /&gt;
&lt;br /&gt;
Calculator, (C) 1998-2019 ChemAxon Ltd.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
version 19.15.0&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
real	0m22.604s&lt;br /&gt;
&lt;br /&gt;
user	0m28.868s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
sys	0m19.380s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Normal execution with Java&lt;br /&gt;
&lt;br /&gt;
$ time java chemaxon.marvin.Calculator&lt;br /&gt;
&lt;br /&gt;
Calculator, (C) 1998-2019 ChemAxon Ltd.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
version 19.15.0&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
real	0m19.084s&lt;br /&gt;
&lt;br /&gt;
user	0m28.498s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
sys	0m19.360s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
First execution with nailgun&lt;br /&gt;
&lt;br /&gt;
$ time ./nailgun-client/target/ng chemaxon.marvin.Calculator&lt;br /&gt;
&lt;br /&gt;
Calculator, (C) 1998-2019 ChemAxon Ltd.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
version 19.15.0&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
real	0m12.016s&lt;br /&gt;
&lt;br /&gt;
user	0m0.000s&lt;br /&gt;
&lt;br /&gt;
sys	0m0.008s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Subsequent execution with nailgun&lt;br /&gt;
&lt;br /&gt;
$ time ./nailgun-client/target/ng chemaxon.marvin.Calculator&lt;br /&gt;
&lt;br /&gt;
Calculator, (C) 1998-2019 ChemAxon Ltd.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
version 19.15.0&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
...&lt;br /&gt;
&lt;br /&gt;
real	0m0.014s&lt;br /&gt;
&lt;br /&gt;
user	0m0.001s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
sys	0m0.004s&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
So the speedup of opening cxcalc multiple times within the server is 1000-fold???&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;/div&gt;</summary>
		<author><name>Frodo</name></author>
	</entry>
</feed>