Therese: 24 revisions

2012-10-08T20:11:51Z

24 revisions

New page

== Attendees & Time==

# Oliv Eidam
# Sarah Boyce
# Rafaela Ferreira
# Gabe Rocklin
# Peter Kolb
# Pascal Wassam
# Hao Fan
# Matt Merski
# Yu Chen
# Denise Teotico
# Francesco Colizzi
# Michael Mysinger

Date: August 06, 2008, 4:00pm - 4:45pm

'''Next DUM on Sept 3, 2008 '''

== Hardware updates==

''Pascal'': the write load on a disk even when the entire cluster is filled with DOCK jobs is negligible, i.e., it rarely happens that two jobs write to the same disk at the same time (cf. [[DUMM1]]).

== Software updates ==

''Oliv'' reports about a recent change in the docking workflow (when starting from <tt>startdockblaster5</tt>): tarted residues can now be found in the form of <tt>.prot2</tt> files, which should be appended to <tt>amb.crg.oxt</tt>. Find more information [[Preparing the protein#Tarting the protein|here]].

===Requests/Improvements===

== Database updates ==

== Varia ==

''Oliv'' reports how to obtain a VPN account for the UCSF network: get an account via [http://oaais.ucsf.edu/OAAIS/service_catalog/networking/219-DSY.html http://oaais.ucsf.edu/OAAIS/service_catalog/networking/219-DSY.html] (students already have one (email account), others need to apply for one with their employee ID and SSN). Afterwards, the VPN client can be run directly from the browser.<br>
''Peter'': there is a page describing [[How to use the QB3 cluster|docking on the QB3 cluster]].<br>
''All'': how to find out about the current version of the docking environment? How can we make sure that dependencies in scripts don't get broken? Is there a way to maintain a certain flexibility in the docking scripts?<br>
''Michael/Peter'' have started to develop their own versions of some key scripts, how can these be made available to the other users?<br>
''Pascal'': a CVS/SVN system could be set up in such a way that all users are automatically notified upon change or addition of a script.

== Action Items ==

''Pascal:'' think about a structure for a potential docking development environment.

[[Category:DUMM]]

→ back to [[Dock Users' Meeting Minutes (DUMM)|DUMM main page]]

Frodo: /* Action Items */

2008-07-10T03:57:00Z

Action Items

← Older revision		Revision as of 03:57, 10 July 2008
Line 20:		Line 20:

	== Action Items ==		== Action Items ==


			[[Category:DUMM]]

			back to [[Dock_Users%27_Meeting_Minutes_%28DUMM%29]]

Frodo at 03:54, 10 July 2008

2008-07-10T03:54:42Z

← Older revision		Revision as of 03:54, 10 July 2008
Line 5:		Line 5:

	'''Next DUM on m XXX '''		'''Next DUM on m XXX '''

			== Agenda ==
			As of this time, there is no agenda. If you wish to speak, write yourself in.

	== Hardware updates==		== Hardware updates==

Frodo at 03:54, 10 July 2008

2008-07-10T03:54:03Z

New page

== Attendees & Time==
#

Date: NNNNNN

'''Next DUM on m XXX '''

== Hardware updates==

== Software updates ==

== Database updates ==

===Requests/Improvements===

== Varia ==

== Action Items ==

DUMM3 - Revision history

Therese: 24 revisions

Frodo: /* Action Items */

Frodo at 03:54, 10 July 2008

Frodo at 03:54, 10 July 2008