http://wiki.docking.org/index.php?action=history&feed=atom&title=DOCK_Blaster%3ADock_PDB_target 2026-04-12T18:31:44Z Revision history for this page on the wiki MediaWiki 1.39.1 http://wiki.docking.org/index.php?title=DOCK_Blaster:Dock_PDB_target&diff=768&oldid=prev 2012-10-08T20:02:05Z

<p>1 revision</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:02, 8 October 2012</td> </tr> <!-- diff cache key wikidb:diff::1.12:old-767:rev-768 --> </table>

Therese http://wiki.docking.org/index.php?title=DOCK_Blaster:Dock_PDB_target&diff=767&oldid=prev 2009-08-06T22:43:30Z

<p></p> <p><b>New page</b></p><div>DOCK Blaster has the capability to perform a docking screen starting from only a PDB code in some cases. To be eligible, the PDB code should specify a file where our scripts can automatically identify the ligand and the receptor unambiguously. In some cases, it may be necessary to specify the three letter code of the ligand so DOCK Blaster knows which HET atoms you wish to use.<br /> <br /> If DOCK Blaster cannot identify the receptor and the ligand, you may still be able to use DOCK Blaster via the &quot;Start from a structure&quot; starting point. This requires that you download the PDB file and prepare it by hand, including specifying the binding site. For more information, see [[Prepare input]].<br /> <br /> Just because DOCK Blaster can start does not mean it will end happily. In fact, in benchmarking studies (Irwin et al., J Med Chem, 2009, in press), we found that only about 18% of the 7,755 proteins attempted produced viable-looking results using fully automated docking. <br /> <br /> [[Category:DOCK Blaster]]</div>

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