DOCK 3.6 - Revision history

Khtang at 22:15, 2 January 2019

2019-01-02T22:15:28Z

← Older revision		Revision as of 22:15, 2 January 2019
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	DOCK 3.6 was the primary version of DOCK used in the [Shoichet Lab]] between 1998 and 2013. It was also called DOCK 3.5.54 or even DOCK 3.5.5.4 or DOCK 3.5ens. It has been largely superseded by [[DOCK 3.7]]. All docking papers from the Shoichet Lab during that time used this program. It was also used by [[DOCK Blaster]] from 2007 until present. We intend to switch over to DOCK 3.7 during 2014.		DOCK 3.6 was the primary version of DOCK used in the [[Shoichet Lab]] between 1998 and 2013. It was also called DOCK 3.5.54 or even DOCK 3.5.5.4 or DOCK 3.5ens. It has been largely superseded by [[DOCK 3.7]]. All docking papers from the Shoichet Lab during that time used this program. It was also used by [[DOCK Blaster]] from 2007 until present. We intend to switch over to DOCK 3.7 during 2014.

	DOCK 3.5.54 was superseded by [[DOCK 3.6]] in May 2010. DOCK 3.5.54 is no longer available.		DOCK 3.5.54 was superseded by [[DOCK 3.6]] in May 2010. DOCK 3.5.54 is no longer available.

2015-02-26T19:05:18Z

kakakasdf

← Older revision		Revision as of 19:05, 26 February 2015
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	= Release Date =		= Release Date =
	DOCK 3.6 was released on April 31, 2010.		DOCK 3.6 was released on April 31, 2010.

			= Techniques =
			* Magdalena will put the link to how to do multiple conformations right here. thank you.

	{{TOCright}}		{{TOCright}}

2014-03-21T15:55:11Z

2014-02-14T16:47:50Z

← Older revision		Revision as of 16:47, 14 February 2014
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	DOCK 3.5.54 was superseded by [[DOCK 3.6]] in May 2010. DOCK 3.5.54 is no longer available.		DOCK 3.5.54 was superseded by [[DOCK 3.6]] in May 2010. DOCK 3.5.54 is no longer available.

			*[[DOCK 3.6 User Manual]]
			*[[DOCK 3.6]]
			*[[BKS lab Structure preparation]]

	* Original documentation as [[Image:Dock3 5refman.pdf \| PDF ]]		* Original documentation as [[Image:Dock3 5refman.pdf \| PDF ]]

2014-02-13T21:51:29Z

← Older revision		Revision as of 21:51, 13 February 2014
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	DOCK 3.~~5.54 is a~~ version of [~~[UCSF~~]] [[DOCK 3~~]] that was used, developed and maintained~~ by ~~the~~ [[~~Shoichet Lab~~]] ~~from 1998 to May 2010~~. All docking papers from the Shoichet Lab during that time used this program. It was also used by [[DOCK Blaster]] until ~~May 2010~~.		DOCK 3.6 was the primary version of DOCK used in the [Shoichet Lab]] between 1998 and 2013. It was also called DOCK 3.5.54 or even DOCK 3.5.5.4 or DOCK 3.5ens. It has been largely superseded by [[DOCK 3.7]]. All docking papers from the Shoichet Lab during that time used this program. It was also used by [[DOCK Blaster]] from 2007 until present. We intend to switch over to DOCK 3.7 during 2014.

	DOCK 3.5.54 was superseded by [[DOCK 3.6]] in May 2010. DOCK 3.5.54 is no longer available.		DOCK 3.5.54 was superseded by [[DOCK 3.6]] in May 2010. DOCK 3.5.54 is no longer available.
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	* [[INDOCK_for_DOCK_3.6]]		* [[INDOCK_for_DOCK_3.6]]

	DOCK 3.6 is the current version of the [[DOCK 3]] series of docking programs used and developed in the [[Shoichet Lab]]. DOCK 3.6 is the engine used by [[DOCK Blaster]]. A sample [[INDOCK for DOCK 3.6]] is available.

	= Release Date =		= Release Date =
	DOCK 3.6 was released on April 31, 2010.		DOCK 3.6 was released on April 31, 2010.

	{{TOCright}}		{{TOCright}}
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	[[Category:Software]]		[[Category:Software]]
	[[Category:DOCK]]		[[Category:DOCK 3.6]]

2012-10-08T20:02:00Z

24 revisions

← Older revision

Revision as of 20:02, 8 October 2012

2011-12-22T18:06:10Z

← Older revision		Revision as of 18:06, 22 December 2011
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	* [[INDOCK_for_DOCK_3.6]]		* [[INDOCK_for_DOCK_3.6]]

	DOCK 3.6 is the current version of the [[DOCK 3]] series of docking programs used and developed in the [[Shoichet ~~Laboratory~~]]. DOCK 3.6 is the engine used by [[DOCK Blaster]]. A sample [[INDOCK for DOCK 3.6]] is available.		DOCK 3.6 is the current version of the [[DOCK 3]] series of docking programs used and developed in the [[Shoichet Lab]]. DOCK 3.6 is the engine used by [[DOCK Blaster]]. A sample [[INDOCK for DOCK 3.6]] is available.

	= Release Date =		= Release Date =

2011-11-21T19:55:21Z

← Older revision		Revision as of 19:55, 21 November 2011
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	* [[Install DOCK 3.5.54]]		* [[Install DOCK 3.5.54]]

			* [[INDOCK_for_DOCK_3.6]]

	DOCK 3.6 is the current version of the [[DOCK 3]] series of docking programs used and developed in the [[Shoichet Laboratory]]. DOCK 3.6 is the engine used by [[DOCK Blaster]]. A sample [[INDOCK for DOCK 3.6]] is available.		DOCK 3.6 is the current version of the [[DOCK 3]] series of docking programs used and developed in the [[Shoichet Laboratory]]. DOCK 3.6 is the engine used by [[DOCK Blaster]]. A sample [[INDOCK for DOCK 3.6]] is available.

2011-11-14T17:14:33Z

Qnifft

← Older revision		Revision as of 17:14, 14 November 2011
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	* Contributed by Kim Sharp & Ryan Coleman		* Contributed by Kim Sharp & Ryan Coleman
	* See [[Qnifft DOCK 3.6 conversion]] page for more information.		* See [[Qnifft DOCK 3.6 conversion]] page for more information.
			* Please cite http://10.0.3.234/bip.360360210 and http://dx.doi.org/10.1016/S0006-3495(98)77566-6

	[[Category:Software]]		[[Category:Software]]
	[[Category:DOCK]]		[[Category:DOCK]]

2011-10-19T00:11:07Z

← Older revision		Revision as of 00:11, 19 October 2011
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	* Ryan Coleman - internal code cleanup (see below)		* Ryan Coleman - internal code cleanup (see below)
	* Niu Huang & lab - ligand clustering code (see below)		* Niu Huang & lab - ligand clustering code (see below)
			* Ryan Coleman & Kim Sharp - [[Qnifft DOCK 3.6 conversion]] replacement for delphi

	= Ligand Desolvation =		= Ligand Desolvation =
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	* See [[Dock Ligand Clustering]] page for more information		* See [[Dock Ligand Clustering]] page for more information

			= Qnifft =
			* Replacement for Delphi, still Poisson Boltzmann electrostatics
			* Contributed by Kim Sharp & Ryan Coleman
			* See [[Qnifft DOCK 3.6 conversion]] page for more information.


	[[Category:Software]]		[[Category:Software]]
	[[Category:DOCK]]		[[Category:DOCK]]