Cluster 2 - Revision history

Jgutierrez6: /* Table of Server Information */

2025-01-07T02:14:52Z

Table of Server Information

← Older revision		Revision as of 02:14, 7 January 2025
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	!Server Name		!Server Name
	!Operating System		!Operating System
			!Hardware
	!Functions		!Functions
	\|-		\|-
	\| epyc \|\| Rocky 8 \|\| Apache/HTTPD Webserver + Proxy		\| epyc \|\| Rocky 8 \|\| CPU \|\| Apache/HTTPD Webserver + Proxy
	\|-		\|-
	\| epyc2 \|\| Rocky 8 \|\|		\| epyc2 \|\| Rocky 8 \|\| CPU \|\| Docker
	\|-		\|-
	\| epyc-A40 \|\| Rocky 8 \|\|		\| epyc-A40 \|\| Rocky 8 \|\| CPU+GPU \|\|
	\|-		\|-
	\| n-1-101 \|\| Centos 7 \|\|		\| n-1-101 \|\| Centos 7 \|\| CPU+GPU \|\| GPU Node
	\|-		\|-
	\| n-1-105 \|\| Centos 7 \|\|		\| n-1-105 \|\| Centos 7 \|\| CPU+GPU \|\| GPU Node
	\|-		\|-
	\| n-1-124 \|\| Centos 7 \|\|		\| n-1-124 \|\| Centos 7 \|\| CPU+GPU \|\| GPU Node
	\|-		\|-
	\| n-1-126 \|\| Centos 7 \|\|		\| n-1-126 \|\| Centos 7 \|\| CPU+GPU \|\| GPU Node
	\|-		\|-
	\| n-1-141 \|\| Centos 7 \|\|		\| n-1-141 \|\| Centos 7 \|\| CPU+GPU \|\| GPU Node
	\|-		\|-
	\| n-1-16 \|\| Centos 7 \|\|		\| n-1-16 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-17 \|\| Centos 7 \|\|		\| n-1-17 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-18 \|\| Centos 7 \|\|		\| n-1-18 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-19 \|\| Centos 7 \|\|		\| n-1-19 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-20 \|\| Centos 7 \|\|		\| n-1-20 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-21 \|\| Centos 7 \|\|		\| n-1-21 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-28 \|\| Centos 7 \|\|		\| n-1-28 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-1-38 \|\| Centos 7 \|\|		\| n-1-38 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-13 \|\| Centos 7 \|\|		\| n-5-13 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-14 \|\| Centos 7 \|\|		\| n-5-14 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-15 \|\| Centos 7 \|\|		\| n-5-15 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-32 \|\| Centos 7 \|\|		\| n-5-32 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-33 \|\| Centos 7 \|\|		\| n-5-33 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-34 \|\| Centos 7 \|\|		\| n-5-34 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-5-35 \|\| Centos 7 \|\|		\| n-5-35 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-19 \|\| Centos 7 \|\|		\| n-9-19 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-20 \|\| Centos 7 \|\|		\| n-9-20 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-21 \|\| Centos 7 \|\|		\| n-9-21 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-22 \|\| Centos 7 \|\|		\| n-9-22 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-34 \|\| Centos 7 \|\|		\| n-9-34 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-36 \|\| Centos 7 \|\|		\| n-9-36 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| n-9-38 \|\| Centos 7 \|\|		\| n-9-38 \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| qof \|\| Centos 7 \|\|		\| qof \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\| shin \|\| Centos 7 \|\|		\| shin \|\| Centos 7 \|\| CPU \|\|
	\|-		\|-
	\|}		\|}

Jgutierrez6: /* SGE */

2024-06-27T21:53:27Z

SGE

← Older revision		Revision as of 21:53, 27 June 2024
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	\| he \|\| Centos 6 \|\| Hosts Vital VMs for cluster 2 for function.		\| he \|\| Centos 6 \|\| Hosts Vital VMs for cluster 2 for function.
	\|-		\|-
	\| het \|\| Centos 6		\| het \|\| Centos 6 \|\|
	\|-		\|-
	\| n-0-129 \|\| Centos 6		\| n-0-129 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-0-136 \|\| Centos 6		\| n-0-136 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-0-139 \|\| Centos 6		\| n-0-139 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-0-30 \|\| Centos 6		\| n-0-30 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-0-37 \|\| Centos 6		\| n-0-37 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-0-39 \|\| Centos 6		\| n-0-39 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-8-27 \|\| Centos 6		\| n-8-27 \|\| Centos 6 \|\|
	\|-		\|-
	\| n-9-23 \|\| Centos 6		\| n-9-23 \|\| Centos 6 \|\|
	\|-		\|-
	\|}		\|}

Jgutierrez6: /* Table of Server Information */

2024-06-27T21:53:04Z

Table of Server Information

← Older revision		Revision as of 21:53, 27 June 2024
Line 115:		Line 115:
	\| epyc \|\| Rocky 8 \|\| Apache/HTTPD Webserver + Proxy		\| epyc \|\| Rocky 8 \|\| Apache/HTTPD Webserver + Proxy
	\|-		\|-
	\| epyc2 \|\| Rocky 8 \|\| ~~Hosts Vital VMs for cluster 2 for function.~~		\| epyc2 \|\| Rocky 8 \|\|
	\|-		\|-
	\| epyc-A40 \|\| Rocky 8 \|\|		\| epyc-A40 \|\| Rocky 8 \|\|
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	\|-		\|-
	\| n-9-38 \|\| Centos 7 \|\|		\| n-9-38 \|\| Centos 7 \|\|
			\|-
			\| qof \|\| Centos 7 \|\|
			\|-
			\| shin \|\| Centos 7 \|\|
	\|-		\|-
	\|}		\|}

Jgutierrez6: /* Introduction */

2024-06-27T21:51:28Z

Introduction

← Older revision		Revision as of 21:51, 27 June 2024
Line 1:		Line 1:
	= Introduction =		= Introduction =
	Cluster 2 is the most modern cluster ~~the~~ Irwin Lab maintains.		Cluster 2 is the most modern cluster Irwin Lab maintains.

	(Edited in May 06,2024)		(Edited in May 06,2024)

Jgutierrez6: /* Where to Submit Jobs and How (SGE/SLURM) */

2024-06-27T17:50:33Z

Where to Submit Jobs and How (SGE/SLURM)

← Older revision		Revision as of 17:50, 27 June 2024
Line 31:		Line 31:

	=== SLURM ===		=== SLURM ===
	* Submit SLURM jobs in gimel2.		Submit SLURM jobs in '''gimel2'''.
			* Refer to the pages below for basic guides
			** [[Slurm]]

	= Special machines =		= Special machines =

Jgutierrez6: /* Where to Submit Jobs and How (SGE/SLURM) */

2024-06-13T20:15:49Z

Where to Submit Jobs and How (SGE/SLURM)

← Older revision		Revision as of 20:15, 13 June 2024
Line 20:		Line 20:

	= Where to Submit Jobs and How (SGE/SLURM) =		= Where to Submit Jobs and How (SGE/SLURM) =
	* Submit SGE jobs in gimel.		=== SGE ===
	** Refer to the pages below for the basic commands/examples.		Submit SGE jobs in the machine called '''gimel.compbio.ucsf.edu''' aka '''gimel'''.
	*** [[SGE Cluster Docking]], replace "sgehead.compbio.ucsf.edu" with ~~"gimel.compbio.ucsf.edu" or, in short,~~ gimel.		* Refer to the pages below for the basic commands/examples.
	*** [[SGE idioms]]		** [[SGE Cluster Docking]], replace '''sgehead.compbio.ucsf.edu''' with '''gimel'''.
	*** For sysadmins, [[SGE_notes]]		** [[SGE idioms]]
			** [[Using SGE cluster]]
			* For sysadmins
			** [[SGE_notes]]
			** [[Sun Grid Engine (SGE)]]

			=== SLURM ===
	* Submit SLURM jobs in gimel2.		* Submit SLURM jobs in gimel2.

Jgutierrez6: /* Where to Submit Jobs SGE/SLURM */

2024-06-13T20:06:26Z

Where to Submit Jobs SGE/SLURM

← Older revision		Revision as of 20:06, 13 June 2024
Line 19:		Line 19:
	<source>ssh -o HostKeyAlgorithms=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>		<source>ssh -o HostKeyAlgorithms=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>

	= Where to Submit Jobs SGE/SLURM =		= Where to Submit Jobs and How (SGE/SLURM) =
	* Submit SGE jobs in gimel.		* Submit SGE jobs in gimel.
			** Refer to the pages below for the basic commands/examples.
			*** [[SGE Cluster Docking]], replace "sgehead.compbio.ucsf.edu" with "gimel.compbio.ucsf.edu" or, in short, gimel.
			*** [[SGE idioms]]
			*** For sysadmins, [[SGE_notes]]
	* Submit SLURM jobs in gimel2.		* Submit SLURM jobs in gimel2.

Jgutierrez6 at 19:57, 13 June 2024

2024-06-13T19:57:34Z

← Older revision		Revision as of 19:57, 13 June 2024
Line 18:		Line 18:
	=== On Site ===		=== On Site ===
	<source>ssh -o HostKeyAlgorithms=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>		<source>ssh -o HostKeyAlgorithms=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>

			= Where to Submit Jobs SGE/SLURM =
			* Submit SGE jobs in gimel.
			* Submit SLURM jobs in gimel2.

	= Special machines =		= Special machines =

Jgutierrez6: /* How to Login */

2024-06-13T19:48:16Z

How to Login

← Older revision		Revision as of 19:48, 13 June 2024
Line 17:		Line 17:

	=== On Site ===		=== On Site ===
	<source>ssh -~~oHostKeyAlgorithms~~=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>		<source>ssh -o HostKeyAlgorithms=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>

	= Special machines =		= Special machines =

Jgutierrez6 at 19:47, 13 June 2024

2024-06-13T19:47:33Z

← Older revision		Revision as of 19:47, 13 June 2024
Line 3:		Line 3:

	(Edited in May 06,2024)		(Edited in May 06,2024)


	= Priorities and Policies =		= Priorities and Policies =
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	* [[Portal system]] for off-site ssh cluster access.		* [[Portal system]] for off-site ssh cluster access.
	* Get a [[Cluster 2 account]] and get started		* Get a [[Cluster 2 account]] and get started

			= How to Login =
			=== Off Site ===
			* Off site access requires an SSH key. Contact sysadmins for help.
			<source>ssh <user>@portal3.compbio.ucsf.edu</source>

			=== On Site ===
			<source>ssh -oHostKeyAlgorithms=+ssh-rsa <user>@gimel.compbio.ucsf.edu</source>

	= Special machines =		= Special machines =