Arthor Documentation for Future Developer - Revision history

Kyle: Update arthor version to 4.2.4

2025-06-12T18:47:18Z

Update arthor version to 4.2.4

← Older revision		Revision as of 18:47, 12 June 2025
Line 81:		Line 81:
	target="*.smi"		target="*.smi"
	threads='48'		threads='48'
	version="3.6.1"		version="4.2.4"


Line 102:		Line 102:
	done		done
	</source>		</source>

			If errors about smi2atdb and atdb2fp show up after running the script make sure '''ARTHOR_DIR''' is a folder that exists and double check '''version'''.

	=== Command Details ===		=== Command Details ===

2025-05-06T20:50:23Z

Active Arthor Instances

2024-11-22T20:23:08Z

Customizing Index.html

← Older revision		Revision as of 20:23, 22 November 2024
Line 294:		Line 294:
	<div class="opt-box-border">		<div class="opt-box-border">
	<label> Database Information</label>		<label> Database Information</label>
	<a href="https://wiki.docking.org/index.php~~/Smallworld_and_Arthor_Databases#Smallworld_Databases~~" target="_blank">Database Information Link</a>		<a href="https://wiki.docking.org/index.php?title=Arthor_Databases" target="_blank">Database Information Link</a>
	</div>		</div>
	</source>		</source>

2024-11-22T04:24:19Z

Customize arthor-swagger.yaml

← Older revision		Revision as of 04:24, 22 November 2024
Line 405:		Line 405:
	# Search for "servers"		# Search for "servers"
	#* <source>?basePath</source>		#* <source>?basePath</source>
	# Remove "/arthor" and keep argument ~~empty~~		# Remove "arthor" and keep argument as "/"

	=== Compile/Minify Code through NPM ===		=== Compile/Minify Code through NPM ===

2024-11-22T04:11:05Z

Customize Sketcher.js

← Older revision		Revision as of 04:11, 22 November 2024
Line 396:		Line 396:
	#* <source>?var smiles = event.src.smiles();</source>		#* <source>?var smiles = event.src.smiles();</source>
	#Add this new line below it		#Add this new line below it
	#* <source>$('#ar_text_input').val(smiles);</source>		#* <source lang="javascript">$('#ar_text_input').val(smiles);</source>

	=== Customize arthor-swagger.yaml ===		=== Customize arthor-swagger.yaml ===

2024-11-22T01:19:13Z

Customize Index.js

← Older revision		Revision as of 01:19, 22 November 2024
Line 321:		Line 321:

	# Add the zinc20 hyperlink to the Arthor results. Search for this		# Add the zinc20 hyperlink to the Arthor results. Search for this
	#* <source>		#: <source lang="javascript">
	$info.append($("<tr>").append($('<td class="identifier">').append(id)));		$info.append($("<tr>").append($('<td class="identifier">').append(id)));
	</source>		</source>
	# Delete the contents of the whole else block and replace it with this		# Delete the contents of the whole else block and replace it with this
	#* <source>		#: <source lang="javascript">
	if (id.substring(0, 6) == "ZINC00") {		if (id.substring(0, 6) == "ZINC00") {
	$info.append(		$info.append(
Line 363:		Line 363:
	#: <source>?parser</source>		#: <source>?parser</source>
	# At the end of the the try block add this		# At the end of the the try block add this
	#: <source>		#: <source lang="javascript">
	$info.append(		$info.append(
	$('<tr>').append(		$('<tr>').append(
Line 369:		Line 369:
	</source>		</source>
	# The whole try and catch block should look like this		# The whole try and catch block should look like this
	#: <source>		#: <source lang="javascript">
	try {		try {
	var parser = new SmiJs.Parser(data);		var parser = new SmiJs.Parser(data);

2024-11-22T01:18:02Z

Remove Similarity and Formula Buttons

← Older revision		Revision as of 01:18, 22 November 2024
Line 301:		Line 301:
	# vim /mnt/nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html		# vim /mnt/nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html
	# Search for 'arthor_search_list'		# Search for 'arthor_search_list'
	#* <source> ?arthor_search_list </source>		#: <source> ?arthor_search_list </source>
	# Delete and Replace the whole 'ul' element block with this		# Delete and Replace the whole 'ul' element block with this
	#* <source>		#: <source lang="html">
	<li value="Similarity" onclick="setSearchType(this)" class="first">		<li value="Similarity" onclick="setSearchType(this)" class="first">
	Similarity		Similarity

2024-11-22T01:16:43Z

Add contact info and tldr

← Older revision		Revision as of 01:16, 22 November 2024
Line 274:		Line 274:
	# vim /nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html		# vim /nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html
	# Search for 'arthor_table_list'		# Search for 'arthor_table_list'
	#* <source>?arthor_table_list</source>		#: <source>?arthor_table_list</source>
	# Add contact info, a plug to tldr.docking.org, and database link after the div block where arthor_table_list is inside of. It should look like this		# Add contact info, a plug to tldr.docking.org, and database link after the div block where arthor_table_list is inside of. It should look like this
	#* <source>		#: <source lang="html">
	<div class="opt-box-border">		<div class="opt-box-border">
	<label>Databases</label>		<label>Databases</label>

2024-11-22T00:54:01Z

Remove Similarity and Formula Buttons

← Older revision		Revision as of 00:54, 22 November 2024
Line 299:		Line 299:

	==== Remove Similarity and Formula Buttons ====		==== Remove Similarity and Formula Buttons ====
	# vim /mnt/nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server/src~~/main/webapp/WEB-INF/static~~/index.html		# vim /mnt/nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html
	# Search for 'arthor_search_list'		# Search for 'arthor_search_list'
	#* <source> ?arthor_search_list </source>		#* <source> ?arthor_search_list </source>

2024-11-22T00:53:23Z

Customizing Index.html

← Older revision		Revision as of 00:53, 22 November 2024
Line 269:		Line 269:

	=== Customizing Index.html ===		=== Customizing Index.html ===
	Location: /nfs/home/jjg/arthor_build_from_source/arthor-4.~~2.4~~/arthor-4.~~2.4~~-source/server-ui/src/index.html		Location: /nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html

	==== Add contact info and tldr ====		==== Add contact info and tldr ====
	# vim /nfs/home/jjg/arthor_build_from_source/arthor-4.~~2.4~~/arthor-4.~~2.4~~-source/server-ui/src/index.html		# vim /nfs/home/jjg/arthor_build_from_source/arthor-4.1/arthor-4.1-source/server-ui/src/index.html
	# Search for 'arthor_table_list'		# Search for 'arthor_table_list'
	#* <source>?arthor_table_list</source>		#* <source>?arthor_table_list</source>