ZINC15 drugbank curation: Difference between revisions

Latest revision as of 22:03, 28 September 2015

Here are the steps to capture a new drugbank.xml file and parse it out, load it, and update all tables.

Check for drugs that are endogenous (and thus could be misannotated)

http://zinc15.docking.org/catalogs/hmdbendo/substances/?catalogs-any-short_name=hmdbdrug

Check for stereochemical ambiguity

Check for molecules in fda approved and not in

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+== loading drugbank ==
 Here are the steps to capture a new drugbank.xml file and parse it out, load it, and update all tables.
+* teague's script
+* load
+* featurescron.csh
+== loading hmdb ==
+== loading iuphar ==
+== spotchecking ==
+Check for drugs that are endogenous (and thus could be misannotated)
+ http://zinc15.docking.org/catalogs/hmdbendo/substances/?catalogs-any-short_name=hmdbdrug
+Check for stereochemical ambiguity
+Check for molecules in fda approved and not in
 [[Category:Curator]]