Useful chimera commands

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Command line

You might like to make a small molecules (eg. HEM) part of the surface of the protein instead of separate: 

 surfcat one #1:1-290
 surf one probeRadius 1.4

You might want to color by partial charge: 

 rangecolor charge,a min blue 0 white max red sel

This command will color the selected atoms by there charge.

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