Difference between revisions of "Useful chimera commands"

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This command will color the selected atoms by there charge.
 
This command will color the selected atoms by there charge.
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Here are some tutorials:
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*[[Chimera Tutorial (AMPC)]]

Revision as of 11:03, 7 January 2017

Command line

You might like to make a small molecules (eg. HEM) part of the surface of the protein instead of separate:

 surfcat one #1:1-290
 surf one probeRadius 1.4

You might want to color by partial charge:

 rangecolor charge,a min red 0 white max blue sel
 rangecolor charge,a -1.0 red 0.0 white 1.0 blue sel

This command will color the selected atoms by there charge.

Here are some tutorials: