Difference between revisions of "Useful chimera commands"

From DISI
Jump to: navigation, search
(Created page with " ==Command line== You might like to make a small molecules (eg. HEM) part of the surface of the protein instead of separate: surfcat one #1:1-290 surf one probeRadius 1....")
 
Line 9: Line 9:
 
You might want to color by partial charge:
 
You might want to color by partial charge:
  
   rangecolor charge,a min blue 0 white max red sel
+
   rangecolor charge,a min red 0 white max blue sel
 +
  rangecolor charge,a -1.0 red 0.0 white 1.0 blue sel
  
 
This command will color the selected atoms by there charge.
 
This command will color the selected atoms by there charge.

Revision as of 17:56, 13 December 2016

Command line

You might like to make a small molecules (eg. HEM) part of the surface of the protein instead of separate:

 surfcat one #1:1-290
 surf one probeRadius 1.4

You might want to color by partial charge:

 rangecolor charge,a min red 0 white max blue sel
 rangecolor charge,a -1.0 red 0.0 white 1.0 blue sel

This command will color the selected atoms by there charge.