Tools for protein and ligand analysis
Jump to navigation
Jump to search
- Plop: minimize ligand and active site
- omega.parm: change settings for ligand conformation generation
- screen3d: align ligands in 3D
- Phenix: calculate electron densities and display them in Pymol
- filter.py: calculate atoms distances of DOCK poses
- FlexPepDock: peptide docking
- Niu Huang DOCK: ligand clustering and pose sampling
- DOCK6 RMSD: calculate ligand RMSDs