Tool-selector

From DISI
Revision as of 19:43, 3 November 2016 by Frodo (talk | contribs) (asdf)
Jump to navigation Jump to search

This page describes the tool selector. It is password protected, thus only for members of the lab.

Click Next (top left) to go to the next page, or edit the URL to jump to a later page: e.g.

http://tool-selector.ucsf.bkslab.org/#/genes?page=20 

40 pages, 50 genes per page.

Suggest you do :

http://tool-selector.ucsf.bkslab.org/#/genes?page=35

but choose any page you like.

Each line is as follows:

Gene symbol. Click it to go to the detail page
second column: number of compounds annotated in ChEMBL20, number of tool compounds selected.
third column: selected tool compounds (click to view in ZINC)

click on gene symbol to go to the detail page for that gene.

box at top: tool compounds chosen.
left: navigate to other genes.
lower right: pool of compounds to select from

you can promote or demote tool compounds. you must click save (top right green button) to commit your changes.

You must click on save to save the comments separately.


Please let me know when you've had a chance to review 10 cmps so we can talk.


Curator's section

Here is how to refresh the purchasability of the observations

curl http://zinc15.docking.org/observations.txt -F count=all -F distinct=no -F sort=no -F substance.purchasable-gt=1 \
-F output_fields="substance.inchikey_prefix gene_name affinity ortholog.name zinc_id substance.features substance.purchasable substance.ecfp4_new.base64"  > newobs.xls

Then sort, filter, add header, restart server.