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- = Run DUD and DUDE benchmarks == * All about [[DUD]]3 KB (386 words) - 19:03, 10 January 2019
- ==Download molecular viewing applications== '''PyMol''' using Dock Blaster link - click Download - select desired platform and follow instruction2 KB (435 words) - 20:25, 8 October 2012
- Get the link from the zinc webpage and us wget to download: wget https://files.rcsb.org/download/1M17.pdb --no-check-certificate7 KB (931 words) - 15:31, 3 October 2017
- ...accessory tools for protein & ligand preparation as well. The website for download will eventually be: http://dock.compbio.ucsf.edu/DOCK3.7/ The filename should be a file that contains PDB codes you want to download.6 KB (1,081 words) - 22:28, 12 June 2017
- * [http://autodude.docking.org/ Auto-DUD-E Test Set] (external site) = How to Download =6 KB (844 words) - 17:03, 27 July 2021
- * [[DUD:FAQ]] ...single identifiable ligand in the file. If this is the case, you need to download the PDB file yourself, and, specifying the binding site, use the "Start wit9 KB (1,448 words) - 22:06, 5 April 2013
- This python script will download the dockable db2 databases from the autodude webpage. download the ligand and decoy isomeric smiles file:27 KB (4,088 words) - 21:04, 19 October 2023
- # download (or generate) ligand and decoy DUD-E like databases. For the CcP ligands download the dock-ready databases from here:18 KB (2,525 words) - 01:31, 16 November 2017
- This python script will download the dockable db2 databases from the autodude webpage. download the ligand and decoy isomeric smiles file:28 KB (4,315 words) - 21:05, 19 October 2023