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  1. Group Meeting‏‎ (1,428 revisions)
  2. Arthor Documentation for Future Developer‏‎ (151 revisions)
  3. DOCK 3.7‏‎ (117 revisions)
  4. Old Main‏‎ (116 revisions)
  5. Generating decoys (Reed's way)‏‎ (106 revisions)
  6. Building The 3D Pipeline ZINC22‏‎ (103 revisions)
  7. AWS:Set up account‏‎ (95 revisions)
  8. Slurm‏‎ (81 revisions)
  9. Ucsfdock‏‎ (81 revisions)
  10. DOCK 3.7 2015/04/15 abl1 Tutorial‏‎ (77 revisions)
  11. ZINC15:examples‏‎ (76 revisions)
  12. How to dock in DOCK3.8‏‎ (75 revisions)
  13. Zfs‏‎ (73 revisions)
  14. Mol2db2 Format 2‏‎ (73 revisions)
  15. Welcome group members‏‎ (66 revisions)
  16. Contract Research Organizations‏‎ (64 revisions)
  17. DOCK Blaster:FAQ‏‎ (64 revisions)
  18. How to use SmallWorld API‏‎ (63 revisions)
  19. Coloring and Subcluster Matching‏‎ (63 revisions)
  20. So you want to set up a lab‏‎ (63 revisions)
  21. DOCK Blaster‏‎ (61 revisions)
  22. Main Page‏‎ (58 revisions)
  23. SmallWorld Documentation for Future Developer‏‎ (57 revisions)
  24. Schrodinger‏‎ (55 revisions)
  25. SUBDOCK DOCK3.8‏‎ (54 revisions)
  26. MUD - Michael's Utilities for Docking‏‎ (52 revisions)
  27. TLDR‏‎ (52 revisions)
  28. How to run and analyze a DOCK run by hand‏‎ (52 revisions)
  29. Set up a Server‏‎ (51 revisions)
  30. Blastermaster2.0‏‎ (51 revisions)
  31. Creating Maps on SmallWorld‏‎ (47 revisions)
  32. Cluster 2‏‎ (46 revisions)
  33. Lab Security Policy‏‎ (45 revisions)
  34. Build ChEMBL for SEA‏‎ (43 revisions)
  35. Tutorial on running Molecular Dynamics for GIST grid generation‏‎ (43 revisions)
  36. How to compile DOCK‏‎ (42 revisions)
  37. ZINC15:Syntax‏‎ (41 revisions)
  38. DOCK Blaster:Tutorials‏‎ (41 revisions)
  39. ZINC15:Backlog‏‎ (41 revisions)
  40. Search zinc22.py‏‎ (41 revisions)
  41. How to generate an HEI database‏‎ (41 revisions)
  42. Manage Lab Websites‏‎ (41 revisions)
  43. AWS:Submit docking job‏‎ (39 revisions)
  44. Resources‏‎ (39 revisions)
  45. Welcome web user‏‎ (38 revisions)
  46. Disk space policy‏‎ (38 revisions)
  47. Upload Wizard‏‎ (38 revisions)
  48. How to do parameter scanning‏‎ (38 revisions)
  49. How to Install a Desktop on Cluster 2‏‎ (36 revisions)
  50. Heather's notes‏‎ (36 revisions)
  51. DOCK Blaster:Preliminaries‏‎ (36 revisions)
  52. Preparing the protein‏‎ (36 revisions)
  53. Docking Analysis in DOCK3.8‏‎ (36 revisions)
  54. Dockopt (pydock3 script)‏‎ (36 revisions)
  55. How to do indexing, partition, and migration in Postgres 10‏‎ (35 revisions)
  56. Using thin spheres in DOCK3.7‏‎ (35 revisions)
  57. Getting started with DOCK 3.7‏‎ (35 revisions)
  58. Psql idioms‏‎ (34 revisions)
  59. DOCK 3.7 2014/09/25 FXa Tutorial‏‎ (34 revisions)
  60. Cluster 1‏‎ (33 revisions)
  61. Interaction Filtering‏‎ (33 revisions)
  62. DUMM1‏‎ (33 revisions)
  63. How to do parallel search of smi files on the cluster‏‎ (32 revisions)
  64. Protein Target Preparation Updated‏‎ (32 revisions)
  65. Cluster 0‏‎ (32 revisions)
  66. DOCK 6‏‎ (31 revisions)
  67. DOCK 3.6‏‎ (30 revisions)
  68. Install DOCK 3.7‏‎ (30 revisions)
  69. How to create a vpn/ssh tunnel‏‎ (30 revisions)
  70. Delphi electrostatics‏‎ (29 revisions)
  71. Renewing Puppet Certificates‏‎ (29 revisions)
  72. How to Create Cluster 7 (Ubuntu 20.04)‏‎ (29 revisions)
  73. DOCK 3.6 User Manual‏‎ (29 revisions)
  74. FEP+ for GPCR‏‎ (29 revisions)
  75. Smallworld and Arthor Databases‏‎ (28 revisions)
  76. DUDE‏‎ (28 revisions)
  77. DUD‏‎ (28 revisions)
  78. How to use Blastermaster 2.0 on UCSF computers‏‎ (27 revisions)
  79. Slurm Installation Guide‏‎ (27 revisions)
  80. Server Room Machines‏‎ (27 revisions)
  81. Understanding MakeDOCK, which automates sphere and grid generation‏‎ (26 revisions)
  82. Automated Database Preparation‏‎ (26 revisions)
  83. Plop‏‎ (26 revisions)
  84. Hypervisor‏‎ (26 revisions)
  85. Backups‏‎ (25 revisions)
  86. DUMM3‏‎ (25 revisions)
  87. Cluster 3‏‎ (25 revisions)
  88. ChEMBL errata‏‎ (24 revisions)
  89. GPCR Waiver Wire‏‎ (24 revisions)
  90. How to process results from a large-scale docking‏‎ (24 revisions)
  91. Ligand preparation - 20170424‏‎ (23 revisions)
  92. Sea16 restart‏‎ (23 revisions)
  93. DOCK Blaster:Tutorial 1‏‎ (23 revisions)
  94. FastROCS‏‎ (23 revisions)
  95. CSD‏‎ (22 revisions)
  96. Calculate volume of the binding site and molecules‏‎ (22 revisions)
  97. DOCK 3.7 tutorial based on Webinar 2017/06/28‏‎ (22 revisions)
  98. How to use Globus‏‎ (22 revisions)
  99. Set up a new Desktop‏‎ (21 revisions)
  100. Mol2db‏‎ (21 revisions)
  101. Chembl processing protocol‏‎ (21 revisions)
  102. DUMM2‏‎ (21 revisions)
  103. DOCK:History‏‎ (20 revisions)
  104. Replacing failed disk on Server‏‎ (20 revisions)
  105. ZINC‏‎ (20 revisions)
  106. UCSF‏‎ (20 revisions)
  107. Reactivity axis‏‎ (20 revisions)
  108. DOCK:FAQ‏‎ (20 revisions)
  109. Generating extrema set‏‎ (20 revisions)
  110. DOCK Blaster:Prepare Input‏‎ (20 revisions)
  111. Decoy Theory‏‎ (20 revisions)
  112. DOCK 3.8‏‎ (20 revisions)
  113. DOCKovalent 3.7‏‎ (20 revisions)
  114. Cartblanche22 Build Instructions‏‎ (20 revisions)
  115. DOCK3.8:Pydock3‏‎ (19 revisions)
  116. Excipients‏‎ (19 revisions)
  117. Cluster Narrative‏‎ (19 revisions)
  118. Analysing the results‏‎ (19 revisions)
  119. Sysadmin idioms‏‎ (19 revisions)
  120. Contribute‏‎ (19 revisions)
  121. DOCKovalent cysteine inhibitor design tutorial‏‎ (19 revisions)
  122. Travel Depth‏‎ (19 revisions)
  123. Cluster Theory‏‎ (19 revisions)
  124. Install SEA‏‎ (19 revisions)
  125. DOCKovalent linker design tutoral‏‎ (19 revisions)
  126. Decoys‏‎ (18 revisions)
  127. Flexibase Format‏‎ (18 revisions)
  128. Docking in AWS With DOCK 3.8‏‎ (18 revisions)
  129. Dock Users' Meeting Minutes (DUMM)‏‎ (18 revisions)
  130. ZINC:History‏‎ (18 revisions)
  131. DOCK 4‏‎ (18 revisions)
  132. Hit picking party‏‎ (18 revisions)
  133. Github‏‎ (18 revisions)
  134. Visualizing delphi‏‎ (18 revisions)
  135. SGE Cluster Docking‏‎ (18 revisions)
  136. Install operating system‏‎ (17 revisions)
  137. How to Replace a Failed Disk‏‎ (17 revisions)
  138. ZINC22:Fine Tranching with RDKit using Heavy Atom Count and LogP‏‎ (17 revisions)
  139. Disk types‏‎ (17 revisions)
  140. Sysadmin‏‎ (17 revisions)
  141. AWS Auto Scaling‏‎ (17 revisions)
  142. Db2multipdb.py‏‎ (17 revisions)
  143. AWS:Merge and download results‏‎ (17 revisions)
  144. GPU DOCK‏‎ (17 revisions)
  145. DOCK 3‏‎ (17 revisions)
  146. ZINC:Command language‏‎ (17 revisions)
  147. Chembl2pdb‏‎ (17 revisions)
  148. DOCK 3.7 tart‏‎ (16 revisions)
  149. ZINC:FAQ‏‎ (16 revisions)
  150. Shoichet Lab Photos‏‎ (16 revisions)
  151. Acquire and deploy hardware‏‎ (16 revisions)
  152. Strain Filtering‏‎ (16 revisions)
  153. Tomcat Installation on CentOS 6‏‎ (16 revisions)
  154. How to link to ZINC‏‎ (16 revisions)
  155. Arkeia‏‎ (16 revisions)
  156. Rsyncing zinc15‏‎ (16 revisions)
  157. Dell PowerConnect 6248 Switch‏‎ (16 revisions)
  158. Terms And Conditions‏‎ (16 revisions)
  159. DUD:Errata‏‎ (15 revisions)
  160. DOCK Blaster:Philosophy‏‎ (15 revisions)
  161. The Lab Windows VM and VirtualBox‏‎ (15 revisions)
  162. Tools for protein and ligand analysis‏‎ (15 revisions)
  163. DOCK 3.7 tutorial (Anat)‏‎ (15 revisions)
  164. DOCK 3.8:How to build a release‏‎ (15 revisions)
  165. AMSOL‏‎ (15 revisions)
  166. ODOSOS‏‎ (15 revisions)
  167. Quick Search Bar‏‎ (15 revisions)
  168. FlexPepDock‏‎ (15 revisions)
  169. Global Matching Sphere Optimization‏‎ (15 revisions)
  170. Worldwide ZINC‏‎ (15 revisions)
  171. DOCK Blaster:History‏‎ (14 revisions)
  172. DUMM4‏‎ (14 revisions)
  173. BKS lab Structure preparation‏‎ (14 revisions)
  174. How To Load New ZINC Databases‏‎ (14 revisions)
  175. Docking tools‏‎ (14 revisions)
  176. PuppetTricks‏‎ (14 revisions)
  177. All About DB2 Files‏‎ (14 revisions)
  178. Pka‏‎ (14 revisions)
  179. Tutorial on running DOCK3.7 with GIST‏‎ (14 revisions)
  180. Docking Competition‏‎ (14 revisions)
  181. ZINC15:current limitations‏‎ (14 revisions)
  182. DUMM6‏‎ (14 revisions)
  183. New hartwig libraries‏‎ (14 revisions)
  184. Performing a Query on 22B Molecules‏‎ (14 revisions)
  185. Erice2010:workshop11‏‎ (14 revisions)
  186. CLI Enumeration‏‎ (14 revisions)
  187. Enm explorer‏‎ (14 revisions)
  188. Membrane Modeling‏‎ (14 revisions)
  189. Filtering Rules‏‎ (14 revisions)
  190. XML RPC Services‏‎ (14 revisions)
  191. Anchor and Grow‏‎ (14 revisions)
  192. Matching Sphere Scan‏‎ (14 revisions)
  193. DOCK 3.8:How to install pydock3‏‎ (13 revisions)
  194. Tutorial on running Molecular Dynamics for GIST grid generation with scripts‏‎ (13 revisions)
  195. Cluster 4‏‎ (13 revisions)
  196. How to run DOCK with a focusing term (internal energy) included‏‎ (13 revisions)
  197. Web Services Description‏‎ (13 revisions)
  198. INDOCK for DOCK 3.6‏‎ (13 revisions)
  199. THC‏‎ (13 revisions)
  200. Privacy policy‏‎ (13 revisions)
  201. RDKit‏‎ (13 revisions)
  202. ZINC subsets‏‎ (13 revisions)
  203. ZINC api‏‎ (13 revisions)
  204. Preparing the ligand‏‎ (13 revisions)
  205. Interactive ligands visualizer‏‎ (13 revisions)
  206. Sample Additional Ring Puckers‏‎ (13 revisions)
  207. Loading ZINC12‏‎ (13 revisions)
  208. Feedback‏‎ (12 revisions)
  209. How to install DOCK 3.8‏‎ (12 revisions)
  210. Public databases‏‎ (12 revisions)
  211. Building Solid Foundations for a Structure Based Design Campaign – Workshop handout Erice 2008‏‎ (12 revisions)
  212. Restartable DOCK37‏‎ (12 revisions)
  213. Gpus‏‎ (12 revisions)
  214. Network‏‎ (12 revisions)
  215. Minimize protein-ligand complex with AMBER‏‎ (12 revisions)
  216. ZINC:Problems‏‎ (12 revisions)
  217. ZINC15:examples:public‏‎ (12 revisions)
  218. Ellman libraries‏‎ (12 revisions)
  219. ZINC15:Levels‏‎ (12 revisions)
  220. How to generate ssh keys securely‏‎ (12 revisions)
  221. Yu Chen's notes‏‎ (12 revisions)
  222. BKS Oracle 10.2.0.1.0 LOG‏‎ (12 revisions)
  223. Create new user‏‎ (12 revisions)
  224. Workstation Install‏‎ (12 revisions)
  225. Aggregator Advisor‏‎ (12 revisions)
  226. ZINC Biogenic Libraries‏‎ (12 revisions)
  227. AutoQSAR/DeepChem for billions of molecules‏‎ (12 revisions)
  228. DOCK on cygwin‏‎ (11 revisions)
  229. Bonded Network Connections‏‎ (11 revisions)
  230. Compbio middleware‏‎ (11 revisions)
  231. ZINC15:Status‏‎ (11 revisions)
  232. Calculate NPR values & Generate Heatmap‏‎ (11 revisions)
  233. Sharing file systems with nfs server and mounting file systems with nfs client‏‎ (11 revisions)
  234. Wynton & BKS‏‎ (11 revisions)
  235. Qnifft DOCK 3.6 conversion‏‎ (11 revisions)
  236. John Irwin‏‎ (11 revisions)
  237. Add Tools18 module‏‎ (11 revisions)
  238. Why Loading ZINC Is So Slow‏‎ (10 revisions)
  239. Assaying Compound Activity‏‎ (10 revisions)
  240. Dock Sampling‏‎ (10 revisions)
  241. Substructure searching‏‎ (10 revisions)
  242. OEChem‏‎ (10 revisions)
  243. Cluster Usage‏‎ (10 revisions)
  244. ZINC22:Numbering‏‎ (10 revisions)
  245. Andrii's notes on SynthI‏‎ (10 revisions)
  246. Private addresses‏‎ (10 revisions)
  247. Understanding SSD: Solid State Drives‏‎ (10 revisions)
  248. ZINC12‏‎ (10 revisions)
  249. Drugs sans targets‏‎ (10 revisions)
  250. Shoichet Lab‏‎ (10 revisions)

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