Deletion log
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Below is a list of the most recent deletions.
- 21:26, 22 February 2024 Frodo talk contribs deleted page How to release DOCK (content was: "To release DOCK: * log in as root to dock.compbio.ucsf.edu aka bksmailman. e.g. from gimel2. * bksmailman is canonical, and pw is based on c2 * cd to /var/www/html/distributions * the active version of dock 3.8 is dock.3.8_source.tar.gz which currently points to pydock3-1.0.0.tar.gz * suggest you upload as pydock3-1.1.0.tar.gz and point dock.3.8_source.tar.gz * tell John you have...", and the only contributor was "Frodo" (talk))
- 00:05, 22 February 2024 Khtang talk contribs deleted page Notes from first attempt at globus (content was: "https://www.globus.org/globus-connect-server In an attempt to install Globus Connect Server, here is my notes of what I have done so far. Note: I have tried installed Globus on gimel2, tau. So far no luck getting it working Detail complete guide https://docs.globus.org/globus-connect-server-installation-guide/ https://www.h3abionet.org/images/Technical_guides/L2_04_How_To_Setup_and_Configure_Globus_Connect_Endpoint_V1.5.pdf === Open required TCP Ports === ==== Check if FQ...")
- 23:58, 15 December 2022 Jgutierrez6 talk contribs deleted page File:Collection.png (not needed anymore)
- 17:05, 2 September 2022 Frodo talk contribs deleted page DOCK on AWS (content was: "DOCK on AWS = First time set up = * 1. create an account https://docs.aws.amazon.com/batch/latest/userguide/spot_fleet_IAM_role.html#spot-fleet-roles-cli define these roles AmazonEC2SpotFleetRole, AWSServiceRoleForEC2Spot and AWSServiceRoleForEC2SpotFleet. * 2. create awsuser (optional!) * 3. create an S3 bucket "results2021" within create dockfiles, database.txt output1 * 4....", and the only contributor was "Frodo" (talk))
- 19:09, 29 August 2022 Frodo talk contribs deleted page Catagory:CC (Author request: content was: "Chemistry Commons articles.", and the only contributor was "Frodo" (talk))
- 22:49, 31 January 2022 Jgutierrez6 talk contribs deleted page How to start SmallWorld server (content was: "== Introduction == Public, private, and super private smallworld run on abacus. == Instructions == * To start an instance # Become root # cat /root/run_smallworld_scripts/sw_5.0.2 # copy and run screen command line for appropriate instance * To stop an instance # ssh into appropriate machine # become root # One Way #* screen -ls #* screen -r <instance_screen_name or instance_screen_number> #* ctrl + C # Second Way #* screen -ls, find instance name or number #* screen -X -S <i...")
- 22:05, 31 January 2022 Jgutierrez6 talk contribs deleted page Smallworlds On Abacus (content was: " == Introduction == Abacus hosts three smallworld servers (one is confidential). Each server contains different datasets. +-----------------+-------------------------+---------------+ |Type |Public |Private | +-----------------+-------------------------+---------------+ |Public |[http://sw.docking.org sw.docking.org]...", and the only contributor was "Jgutie11" (talk))
- 20:11, 14 May 2021 Jgutierrez6 talk contribs deleted page Abacus (Outdated)
- 00:56, 14 May 2021 Jgutierrez6 talk contribs deleted page File:Screen Shot 2021-05-12 at 11.59.33 AM.png
- 19:22, 10 May 2021 Frodo talk contribs deleted page How to debug zinc22 lookup failures (content was: "This command allows you to debug which servers do not contain expected molecules. next step is to look at the servers and the loading logs for why these molecules fa..." (and the only contributor was "Frodo"))
- 19:04, 26 August 2019 Khtang talk contribs deleted page Ben's Summer Schedule (content was: "(delete)")
- 19:00, 20 March 2019 Khtang talk contribs deleted page FastROCS Usage (content was: "===Running query on FastROCS server=== ====1. Set up virtual environment==== cd /nfs/home/khtang/ex9/openeye/FastROCS source ./source_venv ====2. Run search===..." (and the only contributor was "Khtang"))
- 22:11, 10 January 2019 Khtang talk contribs deleted page DOCK:Introduction (content was: "DOCK addresses the problem of "docking" molecules to each other. In general, "docking" is the identification of the low-energy binding modes of a small molecule, or ligand, within the active site of a macromolecule, or receptor, whose st...")
- 21:44, 10 January 2019 Khtang talk contribs deleted page DOCK 3.5 Changes (content was: "General operation changes to DOCK3.5 • Everything that happens after the generation of a rotation-matrix has been completely re-written. This includes applying the rotation-matrix, scoring the atoms, sorting to get the hit list, savi...")
- 19:54, 10 January 2019 Khtang talk contribs deleted page Dock program (content before blanking was: "#REDIRECT Category:DOCK")
- 23:23, 4 January 2019 Khtang talk contribs deleted page ZINK (content was: "#REDIRECT Category:ZINC" (and the only contributor was "Frodo"))
- 23:13, 4 January 2019 Khtang talk contribs undeleted page Category:ZINC12 (2 revisions restored)
- 22:42, 4 January 2019 Khtang talk contribs deleted page Zinc12 (content was: "#REDIRECT ZINC12" (and the only contributor was "Khtang"))
- 22:42, 4 January 2019 Khtang talk contribs deleted page Category:ZINC12 (Obsolete category)
- 22:34, 4 January 2019 Khtang talk contribs undeleted page Zinc12 (2 revisions restored)
- 22:33, 4 January 2019 Khtang talk contribs deleted page Zinc12 (obsolete page)
- 20:29, 3 January 2019 Khtang talk contribs deleted page File:Dud.jpg (Deleted old revision 20190103202827!Dud.jpg)
- 19:15, 3 January 2019 Khtang talk contribs deleted page Template:Docking Infobox (content was: "{{#ifeq:{{{child|}}}|yes||<table class="infobox {{{bodyclass|}}}" cellspacing="3" style="{{#ifeq:{{{subbox|}}}|yes |padding:0; border:none; border-spacing:3px; mar..." (and the only contributor was "Khtang"))
- 19:48, 30 July 2018 Frodo talk contribs deleted page How to install R Shiny (Author request: content was: "This tutorial shows how to install R Shiny on Centos 7. '''Install R''' <pre> sudo yum install R </pre> '''Install Shiny and dependency packages''' <pre> sudo su ..." (and the only contributor was "[[Special:Contribution...)
- 23:41, 26 February 2018 Benrwong talk contribs deleted page Issues with server resh (no longer an issue)
- 00:34, 2 October 2015 Frodo talk contribs deleted page Curator:Daily (obsolete)
- 00:29, 2 October 2015 Frodo talk contribs deleted page ZINC Catalogs (obsolete)
- 00:25, 2 October 2015 Frodo talk contribs deleted page ZINC15:issues (obsolete)
- 00:17, 2 October 2015 Frodo talk contribs deleted page Gene relations (obsolete)
- 00:15, 2 October 2015 Frodo talk contribs deleted page Conceptual developments in ZINC15 (obsolete)
- 00:14, 2 October 2015 Frodo talk contribs deleted page ATC codes (obsolete)
- 23:47, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:resources (obsolete)
- 23:37, 1 October 2015 Frodo talk contribs deleted page Webmaster idioms (obsolete)
- 23:35, 1 October 2015 Frodo talk contribs deleted page ZINC15 idioms (obsolete)
- 23:34, 1 October 2015 Frodo talk contribs deleted page ZINC15 shell idioms (obsolete)
- 23:31, 1 October 2015 Frodo talk contribs deleted page More ZINC15 Idioms (obsolete)
- 03:24, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:bioactive (obsolete)
- 03:24, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:biogenic (obsolete)
- 03:24, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:genes (obsolete)
- 03:21, 1 October 2015 Frodo talk contribs deleted page ZINC15:Actions (obsolete)
- 03:20, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:results-figures (obsolete)
- 03:18, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:results-tables (obsolete)
- 03:15, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:introduction (obsolete)
- 03:14, 1 October 2015 Frodo talk contribs deleted page ZINC15:examples:abstract (obsolete)
- 18:49, 28 September 2015 Frodo talk contribs deleted page Get database statistics (obsolete)
- 18:48, 28 September 2015 Frodo talk contribs deleted page ZINC15:errata (obsolete)
- 18:47, 28 September 2015 Frodo talk contribs deleted page ZINC15:Main entry points (obsolete)
- 18:46, 28 September 2015 Frodo talk contribs deleted page New zinc15 resources (obsolete)
- 18:45, 28 September 2015 Frodo talk contribs deleted page ZINC15-examples:results-text (obsolete)
- 18:41, 28 September 2015 Frodo talk contribs deleted page ZINC15:Caveats (obsolete)
- 18:41, 28 September 2015 Frodo talk contribs deleted page ZINC15:Constraints (obsolete)
- 23:40, 17 September 2015 Frodo talk contribs deleted page Things to do before zinc15 is published (content was: "= Must have = * substance.clean * hide premier in tranches = Like to have = * dnp vs beijing db = After paper sent out =" (and the only contributor was "Frodo"))
- 21:46, 16 September 2015 Frodo talk contribs deleted page ZINC 15 api (content was: "#REDIRECT Webapi" (and the only contributor was "Frodo"))
- 21:36, 16 September 2015 Frodo talk contribs deleted page Webapi (content was: "#REDIRECT ZINC15:Syntax" (and the only contributor was "Frodo"))
- 05:22, 11 June 2015 Frodo talk contribs undeleted page Category:Public (1 revision restored: wondering)
- 04:39, 11 June 2015 Frodo talk contribs deleted page Category:Policies (content was: "Policies" (and the only contributor was "Therese"))
- 05:37, 3 June 2015 Frodo talk contribs deleted page Category:Security (content was: "Security related pages. Category:Topic Category:Internal" (and the only contributor was "Frodo"))
- 05:34, 3 June 2015 Frodo talk contribs deleted page Portal:EMBO2010 (content was: "<div id="Docking Workshop"></div> = Docking @ EMBO/Paris June 28 - July 3, 2010 = This is the wiki page for the target-based virtual screening course at the Biophysical computation EMBO course to be held in Paris, France, June 28-Jul 4....")
- 05:33, 3 June 2015 Frodo talk contribs deleted page Portal:DOCK (content was: "#REDIRECT Category:DOCK")
- 05:32, 3 June 2015 Frodo talk contribs deleted page Category:Portal (content before blanking was: "Portals collect related pages by topic, attribute or article type to make this site easier to navigate. Were you looking for perimeter security f...")
- 04:39, 3 June 2015 Frodo talk contribs deleted page Third party software (content was: "#REDIRECT Category:Third party software" (and the only contributor was "Frodo"))
- 04:39, 3 June 2015 Frodo talk contribs deleted page Category:Third party software (content before blanking was: "By third party software we obviously mean software that is not ours. We also usually mean one of the following: * A. is essential to our work OR * B. is strongly favored by at least one member of the lab OR * C. is licens...")
- 20:23, 13 June 2014 Frodo talk contribs deleted page Cluster (disambiguation) (content was: "Cluster may refer to: * Our computer clusters. Please use Cluster 2 if you can, otherwise Cluster 0 or [Cluster 1]] if you must. * ..." (and the only contributor was "Frodo"))
- 20:47, 6 June 2014 Frodo talk contribs deleted page COPY TO TORONTO (content was: "Here is how to copy files to Toronto (UofT Cluster). imagine you want to copy the directory stuff-to-copy to the account tbalius in Toronto tar czf - stuft-to-copy/ | ssh tbalius@sgehead.uoft.bkslab.org "tar xzf - -C /mnt/nfs/hom...")
- 20:46, 6 June 2014 Frodo talk contribs undeleted page COPY TO TORONTO (4 revisions restored: Trent)
- 13:54, 29 May 2014 Frodo talk contribs deleted page Cluster description (content was: "Computer cluster. A total of XXX rack-mounted, air and water cooled computer nodes in 8 physical racks, housed in dedicated computer rooms on the ground floor of the..." (and the only contributor was "Frodo"))
- 16:36, 14 May 2014 Frodo talk contribs deleted page Toronto hints (content was: "Hints to get started in Toronto (UofT Cluster). = CSD = ssh -Y sgehead cq (if you have a good .cshrc installed) (this is the most helpful description of a how to run a critical lab software I've ever encountered) [[Category:YYZ]...")
- 16:36, 14 May 2014 Frodo talk contribs deleted page Disk types in Toronto (content was: "#REDIRECT Disk types" (and the only contributor was "Frodo"))
- 16:35, 14 May 2014 Frodo talk contribs deleted page COPY TO TORONTO (content was: "Here is how to copy files to Toronto (UofT Cluster). imagine you want to copy the directory stuff-to-copy to the account tbalius in Toronto tar czf - stuft-to-copy/ | ssh tbalius@sgehead.uoft.bkslab.org "tar xzf - -C /mnt/nfs/hom...")
- 16:35, 14 May 2014 Frodo talk contribs deleted page Toronto progress (content was: "You might be asking yourself, where are we with the move to Toronto. This is the status as of April 6, 2013. = Short History = * The cluster started running Tues Aug 21 at 7pm Toronto time. * It has been up continuously since, except f...")
- 14:48, 23 April 2014 Frodo talk contribs deleted page Server rack 2 (content was: "Server rack 2 is part of Cluster 0 *everclear *korn *vmware *nis *cvs *zincdb2 *msa1500-1 *Fibre switch *nfshead1 *garbage *scratch *raid1 disk *raid2 disk *internal net switch *external net switch Back to Cluster 0. Categor...")
- 14:48, 23 April 2014 Frodo talk contribs deleted page Server rack 1 (content was: "Server Rack 1 is part of Cluster 0 *BKS148-156 *Wilco *Mon *Installer *Marilyn2 *Jerry *sgehead *sgemaster *zincdb1 *offspring *raid6 disk *proust1 disk *clash *blondie *switch-1-1 Back to Cluster 0. Category:Sysadmin")
- 15:46, 21 April 2014 Frodo talk contribs deleted page Security review (content was: "Having been hacked, we strongly encourage you to adopt the portal architecture to prevent attack by third parties. For security reasons, we will not describe this i..." (and the only contributor was "Frodo"))
- 15:14, 17 April 2014 Frodo talk contribs deleted page Jji page (content was: "we are going to try to make this page hidden." (and the only contributor was "Frodo"))
- 21:18, 18 March 2014 Frodo talk contribs deleted page Category:Surveys (content was: "Questions we are actively soliciting input for." (and the only contributor was "Frodo"))
- 21:18, 18 March 2014 Frodo talk contribs deleted page Category:UNIX (content was: "UNIX" (and the only contributor was "Therese"))
- 21:18, 18 March 2014 Frodo talk contribs deleted page Category:XML (content was: "XML" (and the only contributor was "Therese"))
- 21:18, 18 March 2014 Frodo talk contribs deleted page Category:TODO (content was: "TODO" (and the only contributor was "Therese"))
- 21:18, 18 March 2014 Frodo talk contribs deleted page Category:Libraries (content was: "Libraries" (and the only contributor was "Therese"))
- 18:15, 18 March 2014 Frodo talk contribs deleted page Yyz cluster (content was: "1. Please see UofT Cluster for current info. 2. To get the dock 3.6 (and other) sources, use svn co svn+ssh://kolb@sgehead.bkslab.org/raid4/svn/dock/trunk dockenv 3. admin machines (all *.uoft.bkslab.org) P = public interface 4...")
- 17:41, 18 March 2014 Frodo talk contribs deleted page Jji to do list (content was: "= ZINC = = DOCK Blaster = == User Support == === 1135, 1135, 1141 === == Table 1 & 2 == === DUD 40 === === Astex 305 === == Scrutinizer == === autotart === === ligand included in target === === cofactor, metals handling === ...")
- 17:39, 18 March 2014 Frodo talk contribs deleted page Xyz todo (content was: "My todo list 1. broken - http://zinc12.docking.org/substance/3850657 2. timeout back in dock? with rgc 3. docking.org approval letter in drupal. 4. specs ftp update fix 5. update znp - zinc natural products 6. update snp - exp...")
- 20:11, 17 March 2014 Frodo talk contribs deleted page How to rsync remotely to the cluster (content was: "Here are scripts that allow you to copy files from outside the network to inside the network in one step. Thanks to Matt! Make two script on the PATH, (I've done it ..." (and the only contributor was "Frodo"))
- 20:02, 17 March 2014 Frodo talk contribs deleted page How to rsync remotely to the cluster (content was: "If people are interested in how to tunnel through the portal, so for instance, coping files from outside the network to inside the network doesn't take two steps, her..." (and the only contributor was "Frodo"))
- 09:55, 13 March 2014 Frodo talk contribs deleted page Companies (content was: "Pharma and other Companies" (and the only contributor was "Frodo"))
- 09:54, 13 March 2014 Frodo talk contribs deleted page Lab Information (content before blanking was: "This page contains stubs to things that need to be documented pertaining to lab operations. == Procedures == * How to run backups * How to restore * How to set up a new computer * Monthly tasks * Security == Hardware ==...")
- 09:54, 13 March 2014 Frodo talk contribs deleted page Novartis (content was: "[http://novartis.com Novartis] Categories:Companies" (and the only contributor was "Frodo"))
- 09:53, 13 March 2014 Frodo talk contribs deleted page Category:Docktionary (content was: "A dictionary pertaining to DOCK - a docktionary." (and the only contributor was "Frodo"))
- 08:40, 13 March 2014 Frodo talk contribs deleted page Build a computer cluster (content was: "Here is our recommendation of how to build a computer cluster that will work well for molecular docking and cheminformatics. This document can be used whether you al..." (and the only contributor was "Frodo"))
- 07:16, 13 March 2014 Frodo talk contribs deleted page How to set up zinc from scratch (content was: "Here is how to set up ZINC from scratch on a new cluster. I'm not sure why you would want to do this, but here is how it would be done. = 1. Purchase and deploy s..." (and the only contributor was "Frodo"))
- 07:10, 13 March 2014 Frodo talk contribs deleted page Portal:Lab (content was: "This is the portal for everything to do with the lab, local information, etc. Don't put passwords here, but otherwise, no need to be secretive. * BKS_Oracle_10.2.0.1.0_LOG - setting up Jerry * Backup_Scheme * Cluster_Usage ...")
- 07:06, 13 March 2014 Frodo talk contribs deleted page Category:Domain (content before blanking was: "A domain describes the type of article it is and is a guide for whom it is intended. Most pages have one domain. * Category:Manual - WHAT - descriptions of programs, packages and websites. * Category:Theory ...")
- 06:43, 13 March 2014 Frodo talk contribs deleted page Installation (content was: "#REDIRECT Category:Install" (and the only contributor was "Frodo"))
- 06:43, 13 March 2014 Frodo talk contribs deleted page Category:Install (content was: "This is a central node for anyone who wishes to install docking.org software. Category:Roles Category:Sysadmin" (and the only contributor was "Frodo"))
- 06:04, 13 March 2014 Frodo talk contribs undeleted page Template:Resize (1 revision restored)
- 06:04, 13 March 2014 Frodo talk contribs undeleted page Template:Cmbox (1 revision restored)
- 06:03, 13 March 2014 Frodo talk contribs undeleted page Template:Template category (1 revision restored)
- 06:02, 13 March 2014 Frodo talk contribs deleted page Target:Aldesterone Synthase (content was: "#REDIRECT Aldesterone Synthase")
- 05:56, 13 March 2014 Frodo talk contribs deleted page Category:Beta (content was: "These pages are for beta testers of new features and no one else. Category:Roles" (and the only contributor was "Frodo"))
- 05:25, 13 March 2014 Frodo talk contribs deleted page Errata (content was: "Errata in publications = DUD paper = DUD:Errata = DUD database = = ZINC database = ZINC:Errata = DOCK Blaster = DB:Errata = WINC = WINC:Errata = Other errors we are aware of = * On the page Errata, th...")