User contributions for TBalius
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3 October 2017
- 15:2015:20, 3 October 2017 diff hist +154 DOCK 3.7 tutorial based on Webinar 2017/06/28 →Scenario 2:
2 October 2017
- 16:1616:16, 2 October 2017 diff hist −1 Chimera Tutorial (Delta opioid receptor) No edit summary
29 September 2017
- 18:2618:26, 29 September 2017 diff hist +1 Using thin spheres in DOCK3.7 No edit summary
13 September 2017
- 23:1623:16, 13 September 2017 diff hist −1 ECFP4 Best First Clustering No edit summary
6 July 2017
- 17:4817:48, 6 July 2017 diff hist +40 Mailing address for the Shoichet lab No edit summary current
- 17:4217:42, 6 July 2017 diff hist +18 Mailing address for the Shoichet lab No edit summary
- 17:4117:41, 6 July 2017 diff hist +87 Mailing address for the Shoichet lab No edit summary
- 17:3617:36, 6 July 2017 diff hist +503 N Mailing address for the Shoichet lab Created page with " There are two mailing address for the Shoichet lab: (1) If you are shipping something though USPS use the following address: Name of Person 1700 4th Street Box 2550 S..."
30 June 2017
- 16:0516:05, 30 June 2017 diff hist +82 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
29 June 2017
- 18:3218:32, 29 June 2017 diff hist +458 DOCK 3.7 tutorial based on Webinar 2017/06/28 →Scenario 2:
- 18:3218:32, 29 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.9.png No edit summary current
- 18:2718:27, 29 June 2017 diff hist +1,168 DOCK 3.7 tutorial based on Webinar 2017/06/28 →Scenario 2:
- 18:2418:24, 29 June 2017 diff hist +183 DOCK 3.7 tutorial based on Webinar 2017/06/28 →Scenario 2:
- 18:2218:22, 29 June 2017 diff hist +294 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 18:2218:22, 29 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.8.png No edit summary current
- 18:1718:17, 29 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.7.png No edit summary current
- 18:1518:15, 29 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.6.png No edit summary current
28 June 2017
- 22:2922:29, 28 June 2017 diff hist +151 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 22:2122:21, 28 June 2017 diff hist +1,102 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 22:2022:20, 28 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.5.png No edit summary current
- 22:1722:17, 28 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.4.png No edit summary current
- 22:1322:13, 28 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.3.png No edit summary current
- 22:0422:04, 28 June 2017 diff hist +856 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 21:5721:57, 28 June 2017 diff hist +599 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 20:1620:16, 28 June 2017 diff hist +732 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 20:1420:14, 28 June 2017 diff hist +62 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 20:1320:13, 28 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.2.png No edit summary current
- 20:1120:11, 28 June 2017 diff hist +485 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 20:0820:08, 28 June 2017 diff hist −39 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 20:0720:07, 28 June 2017 diff hist 0 File:DOCK3.7tuturial.2017.06.28.png TBalius uploaded a new version of "File:DOCK3.7tuturial.2017.06.28.png" current
- 19:1419:14, 28 June 2017 diff hist +46 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 19:1019:10, 28 June 2017 diff hist +78 DOCK 3.7 tutorial based on Webinar 2017/06/28 No edit summary
- 19:0919:09, 28 June 2017 diff hist +52 DOCK 3.7 →Start here
- 19:0819:08, 28 June 2017 diff hist 0 N File:DOCK3.7tuturial.2017.06.28.png No edit summary
- 19:0019:00, 28 June 2017 diff hist +158 N DOCK 3.7 tutorial based on Webinar 2017/06/28 Created page with " Scenario 1: Use docking to predicted how Erlotinib (an approved drug) binds to the Epidermal Growth Factor Receptor File:DOCK3.7tuturial.2017.06.28.png"
12 June 2017
- 22:2822:28, 12 June 2017 diff hist +5 Dock3.7 No edit summary current
- 22:2722:27, 12 June 2017 diff hist +49 Dock3.7 No edit summary
- 16:1116:11, 12 June 2017 diff hist +1 DOCK 3.7 tutorial (Anat) →Set docking directories
- 16:0916:09, 12 June 2017 diff hist +9 DOCK 3.7 tutorial (Anat) →Set docking directories
- 16:0816:08, 12 June 2017 diff hist +1 DOCK 3.7 tutorial (Anat) →Set docking directories
- 16:0716:07, 12 June 2017 diff hist +108 DOCK 3.7 tutorial (Anat) →ligand prep
22 May 2017
- 23:0423:04, 22 May 2017 diff hist +153 DOCK 3.7 tart No edit summary
3 May 2017
- 16:2616:26, 3 May 2017 diff hist +99 Tutorial on running Molecular Dynamics for GIST grid generation with scripts 2 No edit summary current
26 April 2017
24 April 2017
- 17:3117:31, 24 April 2017 diff hist −8 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 17:3017:30, 24 April 2017 diff hist −8 DOCK 3.7 with GIST tutorials No edit summary
- 17:3017:30, 24 April 2017 diff hist +59 DOCK 3.7 with GIST tutorials No edit summary
- 17:3017:30, 24 April 2017 diff hist +60 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
19 April 2017
- 16:5216:52, 19 April 2017 diff hist 0 Tutorial on running DOCK3.7 with GIST →docking
- 16:5116:51, 19 April 2017 diff hist +350 Tutorial on running DOCK3.7 with GIST →prepare system for docking
18 April 2017
- 21:0021:00, 18 April 2017 diff hist +3,860 Tutorial on running DOCK3.7 with GIST →enrichment
- 17:5217:52, 18 April 2017 diff hist +5 DOCK 3.7 2015/04/15 abl1 Tutorial →set up directories and get databases
- 17:4817:48, 18 April 2017 diff hist +16 DOCK 3.7 2015/04/15 abl1 Tutorial →run enrichment calculations
- 17:3017:30, 18 April 2017 diff hist −4 Ligand preparation - 20170424 →3 ways to build ligands:
- 17:2917:29, 18 April 2017 diff hist +6 Ligand preparation - 20170424 →3 ways to build ligands:
- 17:2717:27, 18 April 2017 diff hist −4 Ligand preparation - 20170424 →3 ways to build ligands:
- 17:0917:09, 18 April 2017 diff hist +2,390 Ligand preparation - 20170424 No edit summary
- 15:5515:55, 18 April 2017 diff hist +306 Tutorial on running Molecular Dynamics for GIST grid generation with scripts →Run GIST post processing
- 15:1415:14, 18 April 2017 diff hist +288 Tutorial on running Molecular Dynamics for GIST grid generation with scripts 2 No edit summary
17 April 2017
- 23:2323:23, 17 April 2017 diff hist +6,859 Tutorial on running DOCK3.7 with GIST →docking
- 23:1823:18, 17 April 2017 diff hist 0 Tutorial on running DOCK3.7 with GIST No edit summary
- 21:5521:55, 17 April 2017 diff hist +137 DOCK 3.7 2015/04/15 abl1 Tutorial →run enrichment calculations
- 21:3721:37, 17 April 2017 diff hist +118 DOCK 3.7 2015/04/15 abl1 Tutorial →Visualize the docking spheres
- 20:3220:32, 17 April 2017 diff hist +2,551 Tutorial on running DOCK3.7 with GIST →prepare system for docking (flex)
- 19:1719:17, 17 April 2017 diff hist +3,637 Tutorial on running DOCK3.7 with GIST No edit summary
- 18:4818:48, 17 April 2017 diff hist +98 Tutorial on running Molecular Dynamics for GIST grid generation with scripts No edit summary
- 18:4618:46, 17 April 2017 diff hist +4,353 N Tutorial on running Molecular Dynamics for GIST grid generation with scripts 2 Created page with "here is 003md.tleap_reduce.csh: #!/bin/csh # This script uses first reduce and then tleap to prepare a receptor for amber. # The outputs are: parameter topology file (prm7..."
- 18:4418:44, 17 April 2017 diff hist +2 Tutorial on running Molecular Dynamics for GIST grid generation with scripts →Prepare for AMBER
- 18:4318:43, 17 April 2017 diff hist +145 Tutorial on running Molecular Dynamics for GIST grid generation with scripts →Prepare for AMBER
- 18:1318:13, 17 April 2017 diff hist +20,538 Tutorial on running Molecular Dynamics for GIST grid generation with scripts →Run GIST post processing
- 17:4717:47, 17 April 2017 diff hist +17,769 Tutorial on running Molecular Dynamics for GIST grid generation with scripts No edit summary
- 17:2417:24, 17 April 2017 diff hist +9,391 Tutorial on running Molecular Dynamics for GIST grid generation with scripts →Prepare for AMBER
- 17:0817:08, 17 April 2017 diff hist −27 Tutorial on running Molecular Dynamics for GIST grid generation with scripts →Set up directories
- 16:5916:59, 17 April 2017 diff hist +1,244 N Tutorial on running Molecular Dynamics for GIST grid generation with scripts Created page with "Tutorial written by Trent Balius (Jan. 9, 2017). Here are more GIST related tutorials: DOCK_3.7_with_GIST_tutorials == Disclaimer == This is foremost for training Shoic..."
- 16:5616:56, 17 April 2017 diff hist +83 DOCK 3.7 with GIST tutorials No edit summary
- 16:5516:55, 17 April 2017 diff hist +73 Tutorial on running DOCK3.7 with GIST No edit summary
- 16:5416:54, 17 April 2017 diff hist +72 Tutorial on running Molecular Dynamics for GIST grid generation No edit summary
14 April 2017
- 22:1022:10, 14 April 2017 diff hist +121 DOCK 3.7 2015/04/15 abl1 Tutorial →run be_blasti.py
- 21:4221:42, 14 April 2017 diff hist +136 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
12 April 2017
- 15:2815:28, 12 April 2017 diff hist +1 Ligand preparation - 20170424 No edit summary
28 February 2017
- 00:1400:14, 28 February 2017 diff hist +64 Tutorial on running Molecular Dynamics for GIST grid generation →Prepare for AMBER
- 00:1200:12, 28 February 2017 diff hist +96 Tutorial on running Molecular Dynamics for GIST grid generation →Prepare for AMBER
- 00:0100:01, 28 February 2017 diff hist +14 Tutorial on running Molecular Dynamics for GIST grid generation No edit summary
30 January 2017
- 16:3616:36, 30 January 2017 diff hist +2 Tutorial on running DOCK3.7 with GIST No edit summary
- 16:3516:35, 30 January 2017 diff hist −5 Tutorial on running DOCK3.7 with GIST No edit summary
- 16:3516:35, 30 January 2017 diff hist +357 Tutorial on running DOCK3.7 with GIST No edit summary
- 16:2816:28, 30 January 2017 diff hist +195 N Tutorial on running DOCK3.7 with GIST Created page with " This tutorial assumes that you have already completed the MD tutorial [Tutorial on running Molecular Dynamics for GIST grid generation]. # use the align the receptor and lig..."
24 January 2017
- 18:1918:19, 24 January 2017 diff hist −79 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 18:1518:15, 24 January 2017 diff hist +2,704 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 17:4617:46, 24 January 2017 diff hist −1 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 17:4617:46, 24 January 2017 diff hist −154 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 17:4517:45, 24 January 2017 diff hist +2 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 17:4417:44, 24 January 2017 diff hist +330 Tutorial on running Molecular Dynamics for GIST grid generation →Run GIST post processing
- 17:1317:13, 24 January 2017 diff hist +146 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 17:1117:11, 24 January 2017 diff hist +1,193 Tutorial on running Molecular Dynamics for GIST grid generation →Run convergence analysis
- 17:0417:04, 24 January 2017 diff hist +84 Tutorial on running Molecular Dynamics for GIST grid generation →Combining GIST grids
- 17:0217:02, 24 January 2017 diff hist +4 Tutorial on running Molecular Dynamics for GIST grid generation →Combining GIST grids
- 17:0217:02, 24 January 2017 diff hist +1,191 Tutorial on running Molecular Dynamics for GIST grid generation →Combining GIST grids