User contributions for TBalius
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2 May 2018
- 21:5021:50, 2 May 2018 diff hist +300 DOCK 3.7 2015/04/15 abl1 Tutorial →combine scores and poses
16 April 2018
- 22:4222:42, 16 April 2018 diff hist +54 Ssh tunnel (Trent's way) No edit summary
- 22:3922:39, 16 April 2018 diff hist +192 Ssh tunnel (Trent's way) No edit summary
- 22:3222:32, 16 April 2018 diff hist +100 Ssh tunnel (Trent's way) No edit summary
- 22:3122:31, 16 April 2018 diff hist −21 Ssh tunnel (Trent's way) No edit summary
- 22:3022:30, 16 April 2018 diff hist +1,183 N Ssh tunnel (Trent's way) Created page with " (1) Open two terminals. In the first terminal write one of the following lines: ssh -CL 2222:gimel.ucsf.bkslab.org:22 -D1080 tbalius@portal.ucsf.bkslab.org -p 22 -i ~/.ssh..."
- 20:5420:54, 16 April 2018 diff hist +45 Minimize protein-ligand complex with AMBER →Step 2. Prepare ligand charges and force field.
- 17:5917:59, 16 April 2018 diff hist +31 Welcome group members →Access from home
12 April 2018
- 16:4516:45, 12 April 2018 diff hist +5 Using thin spheres in DOCK3.7 →Tutorial for using Thin Spheres in DOCK 3.7
- 16:4316:43, 12 April 2018 diff hist +2,085 Using thin spheres in DOCK3.7 No edit summary
11 April 2018
- 17:5317:53, 11 April 2018 diff hist +200 Using thin spheres in DOCK3.7 No edit summary
6 April 2018
- 20:1620:16, 6 April 2018 diff hist −2 Minimize protein-ligand complex with AMBER →Step 2. Prepare ligand charges and force field.
- 20:0920:09, 6 April 2018 diff hist +431 Minimize protein-ligand complex with AMBER →Step 2. Prepare ligand charges and force field.
- 00:4700:47, 6 April 2018 diff hist +1 Minimize protein-ligand complex with AMBER →Step 4. Run minimization using the amber program PMEMD.cuda on a GPU machine
- 00:4700:47, 6 April 2018 diff hist +1 Minimize protein-ligand complex with AMBER →Step 4. Run minimization using the amber program PMEMD.cuda on a GPU machine
- 00:4700:47, 6 April 2018 diff hist +27 Minimize protein-ligand complex with AMBER →Step 4. Run minimization using the amber program PMEMD.cuda on a GPU machine
- 00:4000:40, 6 April 2018 diff hist +325 Minimize protein-ligand complex with AMBER →Step 4. Run minimization using the amber program PMEMD.cuda on a GPU machine
2 April 2018
- 17:1917:19, 2 April 2018 diff hist +65 Minimize protein-ligand complex with AMBER No edit summary
- 17:1817:18, 2 April 2018 diff hist −6 Minimize protein-ligand complex with AMBER No edit summary
- 17:1717:17, 2 April 2018 diff hist +81 Minimize protein-ligand complex with AMBER →Step 1. Break up the complex into ligand (small molecule) and receptor.