User contributions for TBalius
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6 January 2017
- 22:4922:49, 6 January 2017 diff hist +229 Using thin spheres in DOCK3.7 No edit summary
- 22:3722:37, 6 January 2017 diff hist +68 Using thin spheres in DOCK3.7 →Tutorial for using Thin Spheres in DOCK 3.7
- 22:2422:24, 6 January 2017 diff hist +87 Using thin spheres in DOCK3.7 →Tutorial for using Thin Spheres in DOCK 3.7
- 22:1622:16, 6 January 2017 diff hist +42 Using thin spheres in DOCK3.7 →Tutorial for using Thin Spheres in DOCK 3.7
- 22:1522:15, 6 January 2017 diff hist +488 Using thin spheres in DOCK3.7 No edit summary
5 January 2017
- 23:4623:46, 5 January 2017 diff hist −3 DOCK 3.7 with GIST tutorials No edit summary
- 23:4323:43, 5 January 2017 diff hist +256 N DOCK 3.7 with GIST tutorials Created page with " To docking with GIST, you must generate gist grids using molecular dynamics to generate a trajectory and this post process it with cpptraj. * Tutorial on running Molecula..."
- 23:4023:40, 5 January 2017 diff hist +35 DOCK 3.7 No edit summary
14 December 2016
- 21:1921:19, 14 December 2016 diff hist 0 Using thin spheres in DOCK3.7 No edit summary
- 00:5600:56, 14 December 2016 diff hist +54 Useful chimera commands No edit summary
- 00:5400:54, 14 December 2016 diff hist −3 Using thin spheres in DOCK3.7 No edit summary
- 00:5300:53, 14 December 2016 diff hist −4 Using thin spheres in DOCK3.7 No edit summary
7 December 2016
- 01:5901:59, 7 December 2016 diff hist +20 Calculate volume of the binding site and molecules No edit summary
- 01:5801:58, 7 December 2016 diff hist +1,474 Calculate volume of the binding site and molecules No edit summary
4 December 2016
- 22:3122:31, 4 December 2016 diff hist +166 Calculate volume of the binding site and molecules No edit summary
- 22:2622:26, 4 December 2016 diff hist +681 Calculate volume of the binding site and molecules →Calculating the volume of a binding site.
- 22:1722:17, 4 December 2016 diff hist −1 Calculate volume of the binding site and molecules →how the volume calculation works.
- 22:0522:05, 4 December 2016 diff hist +51 Calculate volume of the binding site and molecules →Calculating the volume of a small molecule.
- 22:0222:02, 4 December 2016 diff hist +66 Calculate volume of the binding site and molecules No edit summary
- 22:0122:01, 4 December 2016 diff hist +298 Calculate volume of the binding site and molecules No edit summary
- 21:5721:57, 4 December 2016 diff hist +377 Calculate volume of the binding site and molecules No edit summary
- 21:5021:50, 4 December 2016 diff hist +8 Calculate volume of the binding site and molecules No edit summary
- 21:4921:49, 4 December 2016 diff hist +1,542 Calculate volume of the binding site and molecules →Calculating the volume of a small molecule.
- 21:4221:42, 4 December 2016 diff hist 0 Calculate volume of the binding site and molecules No edit summary
- 21:4221:42, 4 December 2016 diff hist +55 Calculate volume of the binding site and molecules No edit summary
- 21:3921:39, 4 December 2016 diff hist +18 Calculate volume of the binding site and molecules No edit summary
- 21:3821:38, 4 December 2016 diff hist +1,094 N Calculate volume of the binding site and molecules Created page with " Written by Trent Balius, Dec. 2016. ==The the volume calculation works.== Lay a grid over the spheres. Count the number or points contained in the spheres (Ns). Count the ..."
- 21:3321:33, 4 December 2016 diff hist +84 N Other Useful Stuff Created page with " Useful chimera commands calculate volume of the binding site and molecules"
- 21:3121:31, 4 December 2016 diff hist 0 DOCK 3.7 No edit summary
- 21:3121:31, 4 December 2016 diff hist +25 DOCK 3.7 No edit summary
2 December 2016
- 16:5216:52, 2 December 2016 diff hist +333 N Useful chimera commands Created page with " ==Command line== You might like to make a small molecules (eg. HEM) part of the surface of the protein instead of separate: surfcat one #1:1-290 surf one probeRadius 1...."
18 November 2016
- 20:2120:21, 18 November 2016 diff hist −6 ZINC15:examples:public No edit summary
3 November 2016
- 19:0519:05, 3 November 2016 diff hist +225 Using thin spheres in DOCK3.7 No edit summary
- 18:5118:51, 3 November 2016 diff hist +32 Using thin spheres in DOCK3.7 No edit summary
- 18:4918:49, 3 November 2016 diff hist −23 Using thin spheres in DOCK3.7 No edit summary
- 18:4118:41, 3 November 2016 diff hist +77 Using thin spheres in DOCK3.7 No edit summary
- 18:2518:25, 3 November 2016 diff hist +32 Using thin spheres in DOCK3.7 No edit summary
- 18:2018:20, 3 November 2016 diff hist +12 Using thin spheres in DOCK3.7 No edit summary
- 18:1718:17, 3 November 2016 diff hist +547 Using thin spheres in DOCK3.7 No edit summary
- 17:2017:20, 3 November 2016 diff hist +98 Using thin spheres in DOCK3.7 No edit summary
- 16:0716:07, 3 November 2016 diff hist +41 Using thin spheres in DOCK3.7 No edit summary
- 15:4615:46, 3 November 2016 diff hist +303 Using thin spheres in DOCK3.7 No edit summary
- 00:1000:10, 3 November 2016 diff hist +119 Using thin spheres in DOCK3.7 No edit summary
2 November 2016
- 23:4223:42, 2 November 2016 diff hist −4 Using thin spheres in DOCK3.7 No edit summary
- 22:2122:21, 2 November 2016 diff hist +991 N Using thin spheres in DOCK3.7 Created page with "1) Run blastermaster.py. this will gerenate two directorys: working and dockfiles 2) make a new directory called mk_thin_spheres: mkdir mk_thin_spheres cd mk_thin_sph..."
- 22:2122:21, 2 November 2016 diff hist −2 DOCK 3.7 tutorial (Anat) →Using modified(existing) delphi spheres:
- 22:2022:20, 2 November 2016 diff hist +36 DOCK 3.7 tutorial (Anat) No edit summary
19 September 2016
- 18:1818:18, 19 September 2016 diff hist +520 DOCK 3.7 2015/04/15 abl1 Tutorial →Modify matching spheres
- 18:0518:05, 19 September 2016 diff hist −2 DOCK 3.7 tart No edit summary
- 18:0518:05, 19 September 2016 diff hist +137 DOCK 3.7 tart No edit summary
- 02:0602:06, 19 September 2016 diff hist +58 DOCK 3.7 2015/04/15 abl1 Tutorial →run enrichment calculations
- 02:0402:04, 19 September 2016 diff hist +1 DOCK 3.7 2015/04/15 abl1 Tutorial →run enrichment calculations
- 01:5901:59, 19 September 2016 diff hist +114 DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun) →Submit an enrichment calculation via 0003.lig-decoy_enrichment_submit.csh current
- 01:5701:57, 19 September 2016 diff hist +279 DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun) No edit summary
- 01:5301:53, 19 September 2016 diff hist +846 DOCK 3.7 2015/04/15 abl1 Tutorial →run enrichment calculations
- 01:3301:33, 19 September 2016 diff hist 0 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 01:2601:26, 19 September 2016 diff hist −84 DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun) No edit summary
16 September 2016
- 16:1916:19, 16 September 2016 diff hist +208 DOCK 3.7 2015/04/15 abl1 Tutorial →run blastermaster.py
- 16:1116:11, 16 September 2016 diff hist +410 DOCK 3.7 2015/04/15 abl1 Tutorial →create AUC plot of ligands and decoys
14 September 2016
- 19:2319:23, 14 September 2016 diff hist −6 Copying files No edit summary current
- 19:1619:16, 14 September 2016 diff hist +223 Copying files No edit summary
23 May 2016
- 17:0917:09, 23 May 2016 diff hist +516 INDOCK 3.7 No edit summary
26 April 2016
- 23:4623:46, 26 April 2016 diff hist +1,332 N Rescoring with DOCK 3.7 Created page with " We often want to get the score for a molecule without doing any docking. DOCK3.7 now can do this internally. In DOCK 3.6 this was done in an exteranl program scoreopt. =..."
- 23:3723:37, 26 April 2016 diff hist +29 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the GIST development version of DOCK current
8 April 2016
- 18:0118:01, 8 April 2016 diff hist +177 Install DOCK 3.7 No edit summary
7 April 2016
- 17:2317:23, 7 April 2016 diff hist +116 DOCK 3.7 2015/04/15 abl1 Tutorial →curating and hit-picking
- 17:0817:08, 7 April 2016 diff hist +200 DOCK 3.7 2015/04/15 abl1 Tutorial →submitting the docking calculations
- 17:0517:05, 7 April 2016 diff hist +254 DOCK 3.7 2015/04/15 abl1 Tutorial →combining the results
- 16:2516:25, 7 April 2016 diff hist +40 DOCK 3.7 2015/04/15 abl1 Tutorial →submitting the docking calculations
- 16:2416:24, 7 April 2016 diff hist +867 DOCK 3.7 2015/04/15 abl1 Tutorial →database setup
6 April 2016
- 21:2621:26, 6 April 2016 diff hist +249 AMSOL No edit summary
- 20:0420:04, 6 April 2016 diff hist +41 DOCK 3.7 tutorial (Anat) →ligand prep
- 20:0220:02, 6 April 2016 diff hist −2 DOCK 3.7 tutorial (Anat) →ligand prep
5 April 2016
- 15:2615:26, 5 April 2016 diff hist +93 History of DOCK 6 →Version 3.5 current
26 January 2016
- 16:5116:51, 26 January 2016 diff hist +42 DOCK 3.7 tutorial (Anat) →Using modified(existing) matching spheres:
- 16:4816:48, 26 January 2016 diff hist +539 DOCK 3.7 tutorial (Anat) No edit summary
25 January 2016
- 19:4019:40, 25 January 2016 diff hist +443 DOCK 3.7 tutorial (Anat) No edit summary
12 October 2015
- 18:0118:01, 12 October 2015 diff hist +7 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 17:5617:56, 12 October 2015 diff hist 0 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 17:5117:51, 12 October 2015 diff hist +260 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
2 October 2015
- 22:1022:10, 2 October 2015 diff hist +1 ZINC15:update policy No edit summary
11 September 2015
- 21:2621:26, 11 September 2015 diff hist +73 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 21:0921:09, 11 September 2015 diff hist +2 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 21:0921:09, 11 September 2015 diff hist +84 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
15 July 2015
- 21:2221:22, 15 July 2015 diff hist +110 How to compile DOCK →profiling dock
29 June 2015
- 17:2417:24, 29 June 2015 diff hist +40 DOCK 3.7 tutorial (Anat) No edit summary
- 17:2117:21, 29 June 2015 diff hist +101 DOCK 3.7 tutorial (Anat) No edit summary
25 June 2015
- 22:4522:45, 25 June 2015 diff hist +5,169 N DOCK 3.7 tutorial (Anat) Created page with "==DOCK 3.7== source /nfs/soft/dock/DOCK-3.7-beta3/env.csh source ~/.cshrc_dock37 (my home directory) *“Up directory” refers to the main directory that contains the ‘doc..."
- 22:3522:35, 25 June 2015 diff hist +31 DOCK 3.7 →Start here
18 June 2015
- 16:2216:22, 18 June 2015 diff hist +142 Trent scripts No edit summary current
29 May 2015
- 18:2218:22, 29 May 2015 diff hist +25 Install DOCK 3.7 No edit summary
- 18:2018:20, 29 May 2015 diff hist +102 Amsol 7 patch No edit summary current
- 15:5415:54, 29 May 2015 diff hist +96 N Amsol 7 patch Created page with " The Amsol 7 patch is located here: $DOCKBASE/ligand/amsol/patches/amsol7.1_port_intcar.f.diff"
12 May 2015
- 22:3622:36, 12 May 2015 diff hist +1,463 DOCKovalent 3.7 →Sending a run
- 21:1721:17, 12 May 2015 diff hist +42 DOCKovalent 3.7 →INDOCK parameters
- 19:2219:22, 12 May 2015 diff hist −12 DOCKovalent 3.7 →Sending a run
- 18:4518:45, 12 May 2015 diff hist +406 DOCKovalent 3.7 →General setup
- 18:3418:34, 12 May 2015 diff hist +143 DOCKovalent 3.7 →General setup
- 18:3118:31, 12 May 2015 diff hist +167 DOCKovalent 3.7 →General setup
23 April 2015
- 23:5723:57, 23 April 2015 diff hist +42 DOCK 3.7 2015/04/15 abl1 Tutorial →make the hing region more polar
- 23:5623:56, 23 April 2015 diff hist +1 DOCK 3.7 tart No edit summary
- 17:5017:50, 23 April 2015 diff hist 0 DOCK 3.7 2015/04/15 abl1 Tutorial →make the hing regen more polar
- 00:1600:16, 23 April 2015 diff hist +69 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
19 April 2015
- 16:5916:59, 19 April 2015 diff hist +11 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 14:1314:13, 19 April 2015 diff hist +149 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
18 April 2015
- 00:3500:35, 18 April 2015 diff hist +3,934 DOCK 3.7 2015/04/15 abl1 Tutorial →improving docking
- 00:2400:24, 18 April 2015 diff hist 0 N File:Modspheres.png No edit summary current
- 00:2400:24, 18 April 2015 diff hist +305 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 00:1700:17, 18 April 2015 diff hist +73 DOCK 3.7 2015/04/15 abl1 Tutorial →combine scores and poses
- 00:1600:16, 18 April 2015 diff hist 0 N File:Decoydock.png No edit summary current
- 00:1500:15, 18 April 2015 diff hist 0 N File:Liganddock.png No edit summary current
- 00:1400:14, 18 April 2015 diff hist −1 DOCK 3.7 2015/04/15 abl1 Tutorial →create AUC plot of ligands and decoys
17 April 2015
- 21:0621:06, 17 April 2015 diff hist +7 DOCK 3.7 2015/04/15 abl1 Tutorial →run blastermaster.py
- 21:0621:06, 17 April 2015 diff hist +187 DOCK 3.7 2015/04/15 abl1 Tutorial →combine scores and poses
- 20:4720:47, 17 April 2015 diff hist +414 DOCK 3.7 2015/04/15 abl1 Tutorial →create AUC plot of ligands and decoys
- 20:4420:44, 17 April 2015 diff hist 0 N File:AblROCplot.png No edit summary current
- 20:4420:44, 17 April 2015 diff hist +166 DOCK 3.7 2015/04/15 abl1 Tutorial →create AUC plot of ligands and decoys
- 20:4120:41, 17 April 2015 diff hist 0 N File:Spheresbox.png No edit summary current
- 20:4020:40, 17 April 2015 diff hist +255 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:3620:36, 17 April 2015 diff hist +22 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:3620:36, 17 April 2015 diff hist −2 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:3420:34, 17 April 2015 diff hist +94 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:3120:31, 17 April 2015 diff hist −2 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:2720:27, 17 April 2015 diff hist +3,924 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 20:2020:20, 17 April 2015 diff hist +2,575 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 20:1020:10, 17 April 2015 diff hist −9 DOCK 3.7 2015/04/15 abl1 Tutorial →run enrichment calucaltions
- 20:0920:09, 17 April 2015 diff hist −98 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:0720:07, 17 April 2015 diff hist 0 File:Spheres.png TBalius uploaded a new version of "File:Spheres.png" current
- 20:0620:06, 17 April 2015 diff hist 0 N File:Spheres.png No edit summary
- 20:0420:04, 17 April 2015 diff hist +9 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:0320:03, 17 April 2015 diff hist −16 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:0320:03, 17 April 2015 diff hist +105 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:0220:02, 17 April 2015 diff hist +38 DOCK 3.7 2015/04/15 abl1 Tutorial →visualize the docking spheres
- 20:0020:00, 17 April 2015 diff hist +156 DOCK 3.7 2015/04/15 abl1 Tutorial →run blastermaster.py
15 April 2015
- 22:4022:40, 15 April 2015 diff hist −12 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 22:1722:17, 15 April 2015 diff hist +6 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 22:0222:02, 15 April 2015 diff hist +275 DOCK 3.7 2015/04/15 abl1 Tutorial →run blastermaster.py
- 21:4621:46, 15 April 2015 diff hist −3,782 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 21:4321:43, 15 April 2015 diff hist +5,528 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 21:4121:41, 15 April 2015 diff hist +3,686 DOCK 3.7 2015/04/15 abl1 Tutorial →run blastermaster.py
- 21:3521:35, 15 April 2015 diff hist 0 N File:Rec lig 2HYY.png No edit summary current
- 21:3221:32, 15 April 2015 diff hist +420 DOCK 3.7 2015/04/15 abl1 Tutorial →run be_blasti.py
- 21:2521:25, 15 April 2015 diff hist +416 N Get msms Created page with " see the following website for information: [http://mgltools.scripps.edu/packages/MSMS/ msms page] ==Installing MSMS == wget http://mgltools.scripps.edu/downloads/tars/rel..." current
- 21:2121:21, 15 April 2015 diff hist +2,479 DOCK 3.7 2015/04/15 abl1 Tutorial →run be_blasti.py
- 21:1121:11, 15 April 2015 diff hist −37 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 21:1021:10, 15 April 2015 diff hist +101 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 21:0921:09, 15 April 2015 diff hist +116 DOCK 3.7 2015/04/15 abl1 Tutorial →set up directories and get databases
- 21:0521:05, 15 April 2015 diff hist +18 DOCK 3.7 2015/04/15 abl1 Tutorial No edit summary
- 21:0421:04, 15 April 2015 diff hist +1,212 DOCK 3.7 2015/04/15 abl1 Tutorial →set up a directory
- 20:4020:40, 15 April 2015 diff hist +213 N DOCK 3.7 2015/04/15 abl1 Tutorial Created page with " This tutoral use the 3.7.2 beta version of dock release on XXX. == set up a directory == == download enrichment databases == == run be_blasti.py== == run blastermaster.py..."
- 20:3620:36, 15 April 2015 diff hist +40 DOCK 3.7 No edit summary
19 March 2015
6 March 2015
- 17:0917:09, 6 March 2015 diff hist +223 How to compile DOCK No edit summary
5 March 2015
- 19:5319:53, 5 March 2015 diff hist −5 How to compile DOCK →debuging dock
- 19:5219:52, 5 March 2015 diff hist +663 How to compile DOCK No edit summary
- 19:3619:36, 5 March 2015 diff hist +1 Install DOCK 3.7 No edit summary
23 October 2014
- 15:4615:46, 23 October 2014 diff hist +87 Mol2db2 No edit summary current
- 15:4515:45, 23 October 2014 diff hist +58 DOCK 3.7 No edit summary
- 15:4415:44, 23 October 2014 diff hist +293 Mol2db2 Format 2 No edit summary current
26 September 2014
- 17:4517:45, 26 September 2014 diff hist +65 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 17:4117:41, 26 September 2014 diff hist +52 N File:Veiwdock.FXa.frag.top200.png chimera veiwdock session for FXa with top 200 frags. current
- 17:3817:38, 26 September 2014 diff hist +64 DOCK 3.7 2014/09/25 FXa Tutorial →pose visualization
- 13:0613:06, 26 September 2014 diff hist +15 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 13:0513:05, 26 September 2014 diff hist +3 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the GIST development version of DOCK
- 13:0513:05, 26 September 2014 diff hist +135 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the GIST development version of DOCK
- 12:5612:56, 26 September 2014 diff hist +62 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 12:5512:55, 26 September 2014 diff hist +377 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 12:4912:49, 26 September 2014 diff hist +348 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:4312:43, 26 September 2014 diff hist +2,005 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:3512:35, 26 September 2014 diff hist +18 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:3212:32, 26 September 2014 diff hist −1 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:3112:31, 26 September 2014 diff hist −55 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:2912:29, 26 September 2014 diff hist +12 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1.
- 12:2712:27, 26 September 2014 diff hist +5 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:2612:26, 26 September 2014 diff hist −3 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:2512:25, 26 September 2014 diff hist +2,405 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 12:0912:09, 26 September 2014 diff hist +292 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 12:0612:06, 26 September 2014 diff hist +1,111 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1.
- 11:5111:51, 26 September 2014 diff hist +7 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 11:5111:51, 26 September 2014 diff hist +739 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 00:3100:31, 26 September 2014 diff hist +41 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1.
25 September 2014
- 23:3223:32, 25 September 2014 diff hist +2 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 23:2923:29, 25 September 2014 diff hist +218 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 23:2323:23, 25 September 2014 diff hist +45 N File:Lowdiele.png This the low dielectric sphere for Factor Xa. current
- 23:2223:22, 25 September 2014 diff hist +21 N File:Match.png FXa matching spheres. current
- 23:2123:21, 25 September 2014 diff hist +36 N File:Sphgenall.png FXa with sphgen all sphere clusters. current
- 23:2023:20, 25 September 2014 diff hist +127 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 22:0722:07, 25 September 2014 diff hist +107 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the GIST development version of DOCK
- 21:5921:59, 25 September 2014 diff hist −3 DOCK 3.7 2014/09/25 FXa Tutorial →Receptor Preparation
- 21:5821:58, 25 September 2014 diff hist +98 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 21:2621:26, 25 September 2014 diff hist +10 Installing msms No edit summary
- 21:2521:25, 25 September 2014 diff hist −9 Installing msms No edit summary
- 21:2421:24, 25 September 2014 diff hist +493 N Installing msms Created page with "## installation notes. Make a directory: mkdir msms go to the dir: cd /your/path/msms Get it from the web: wget http://mgltools.scripps.edu/downloads/tars/releases/MSMSREL..."
- 21:1621:16, 25 September 2014 diff hist +64 Install DOCK 3.7 No edit summary
- 20:5420:54, 25 September 2014 diff hist +143 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1.
- 19:2019:20, 25 September 2014 diff hist +2 DOCK 3.7 2014/09/25 FXa Tutorial →This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1.
- 19:2019:20, 25 September 2014 diff hist +356 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 18:4718:47, 25 September 2014 diff hist +19 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 18:4718:47, 25 September 2014 diff hist +19 DOCK 3.7 2014/09/25 FXa Tutorial No edit summary
- 18:3518:35, 25 September 2014 diff hist +874 N DOCK 3.7 2014/09/25 FXa Tutorial Created page with " Written by Trent E Balius and Crystal Nguyen on 2014/09/25 == This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1. == see the following for requirement..."
- 17:1817:18, 25 September 2014 diff hist +39 DOCK 3.7 No edit summary
21 September 2014
- 22:2922:29, 21 September 2014 diff hist +237 Install DOCK 3.7 No edit summary
13 September 2014
- 22:5722:57, 13 September 2014 diff hist +161 Install DOCK 3.7 No edit summary
- 22:4822:48, 13 September 2014 diff hist +110 Install DOCK 3.7 No edit summary
- 22:4422:44, 13 September 2014 diff hist +61 Install DOCK 3.7 No edit summary
- 22:4122:41, 13 September 2014 diff hist +218 Install DOCK 3.7 No edit summary
27 August 2014
- 18:5018:50, 27 August 2014 diff hist +9 Github →Fork for Development current
- 18:3418:34, 27 August 2014 diff hist +102 Github No edit summary
- 18:2018:20, 27 August 2014 diff hist +206 Github →Set up for ssh access
24 July 2014
- 18:5318:53, 24 July 2014 diff hist −4 Github No edit summary
22 July 2014
- 23:3823:38, 22 July 2014 diff hist 0 DOCK on cygwin No edit summary current
- 23:3723:37, 22 July 2014 diff hist 0 DOCK on cygwin No edit summary
- 23:3723:37, 22 July 2014 diff hist −1 DOCK on cygwin No edit summary
- 23:3423:34, 22 July 2014 diff hist −1 DOCK on cygwin No edit summary
- 23:3323:33, 22 July 2014 diff hist +62 DOCK on cygwin No edit summary
- 23:3223:32, 22 July 2014 diff hist +207 DOCK on cygwin No edit summary
6 June 2014
- 21:0821:08, 6 June 2014 diff hist +159 Copying files No edit summary
- 20:5420:54, 6 June 2014 diff hist +28 Disk types No edit summary
- 20:4520:45, 6 June 2014 diff hist +2 Automated Database Preparation →Automatic Decoy Generation current
- 20:4520:45, 6 June 2014 diff hist +183 Automated Database Preparation →Automatic Decoy Generation
14 March 2014
- 12:4212:42, 14 March 2014 diff hist 0 BKS lab Structure preparation →Preparing cofactors or nonstandard residue for receptor current
- 12:4112:41, 14 March 2014 diff hist −6 BKS lab Structure preparation No edit summary
8 November 2013
- 16:3916:39, 8 November 2013 diff hist +657 Automated Database Preparation →Automatic Decoy Generation
28 October 2013
8 October 2013
- 20:4920:49, 8 October 2013 diff hist +154 DOCK 3.7 No edit summary
- 20:4520:45, 8 October 2013 diff hist +14 DOCK 3 No edit summary
- 20:4520:45, 8 October 2013 diff hist +53 DOCK 3 →History
9 September 2013
- 14:4914:49, 9 September 2013 diff hist +2 DOCK Overview →(A) Sphere Centers
- 14:4614:46, 9 September 2013 diff hist +21 DOCK Overview No edit summary
5 September 2013
- 21:3621:36, 5 September 2013 diff hist +4 Disk types No edit summary
- 21:3221:32, 5 September 2013 diff hist −40 Disk types No edit summary
- 21:3121:31, 5 September 2013 diff hist +19 Disk types →scratch
- 21:2321:23, 5 September 2013 diff hist +1 Disk types →scratch
- 21:2221:22, 5 September 2013 diff hist +681 Disk types No edit summary
6 August 2013
- 15:3115:31, 6 August 2013 diff hist +39 Cluster 4 No edit summary
- 15:2915:29, 6 August 2013 diff hist +696 Cluster 4 No edit summary
- 15:1715:17, 6 August 2013 diff hist 0 Cluster 4 No edit summary
- 15:1615:16, 6 August 2013 diff hist +663 Cluster 4 No edit summary
- 14:5814:58, 6 August 2013 diff hist +2 Cluster 4 No edit summary
- 14:5814:58, 6 August 2013 diff hist +171 N Cluster 4 Created page with "This instructions are intended for Shoichet lab members. (1) Register with the Compute Canada Database (CCDB): (1.1) go to the following page and click Register (1.2)"
- 14:3314:33, 6 August 2013 diff hist +2 About our cluster No edit summary
- 14:3314:33, 6 August 2013 diff hist +67 About our cluster No edit summary
24 July 2013
- 16:0516:05, 24 July 2013 diff hist +19 Disk types No edit summary
- 15:0415:04, 24 July 2013 diff hist +80 Using local Subversion Repository (SVN) No edit summary
23 January 2013
- 22:3422:34, 23 January 2013 diff hist +3 BKS lab Structure preparation No edit summary
- 22:3422:34, 23 January 2013 diff hist +123 BKS lab Structure preparation No edit summary
22 January 2013
- 19:2419:24, 22 January 2013 diff hist −2 BKS lab Structure preparation →Preparing cofactors or nonstandard residue for receptor
- 19:2119:21, 22 January 2013 diff hist +207 BKS lab Structure preparation No edit summary