User contributions for Rstein
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11 October 2019
- 00:5700:57, 11 October 2019 diff hist −3 Generating decoys (Reed's way) →Querying ZINC for SMILES
- 00:5600:56, 11 October 2019 diff hist −3 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
10 October 2019
- 18:5918:59, 10 October 2019 diff hist +535 Protein Target Preparation Updated →Running Blastermaster current
4 October 2019
- 02:1002:10, 4 October 2019 diff hist +25 Protein Target Preparation Updated →Running Blastermaster
3 October 2019
- 17:3117:31, 3 October 2019 diff hist +105 Protein Target Preparation Updated →Useful References
- 17:2817:28, 3 October 2019 diff hist +11 Protein Target Preparation Updated →Running Blastermaster
- 17:2817:28, 3 October 2019 diff hist +144 Protein Target Preparation Updated →Running Blastermaster
- 17:2617:26, 3 October 2019 diff hist +14 Protein Target Preparation Updated →Running Blastermaster
- 17:2417:24, 3 October 2019 diff hist +6 Protein Target Preparation Updated →Useful References
- 17:2417:24, 3 October 2019 diff hist +1,606 Protein Target Preparation Updated No edit summary
- 17:0917:09, 3 October 2019 diff hist −3 Protein Target Preparation Updated →Running Blastermaster
- 17:0817:08, 3 October 2019 diff hist +274 Protein Target Preparation Updated →Running Blastermaster
- 17:0017:00, 3 October 2019 diff hist +596 Protein Target Preparation Updated →Running Blastermaster
28 August 2019
- 21:3821:38, 28 August 2019 diff hist +1,692 Protein Target Preparation Updated →How Blastermaster works
- 21:3021:30, 28 August 2019 diff hist +74 Protein Target Preparation Updated →How Blastermaster works
- 21:2921:29, 28 August 2019 diff hist +251 Protein Target Preparation Updated →How Blastermaster works
- 19:2119:21, 28 August 2019 diff hist 0 Protein Target Preparation Updated →How Blastermaster works
- 19:2019:20, 28 August 2019 diff hist +67 Protein Target Preparation Updated →How Blastermaster works
- 19:1819:18, 28 August 2019 diff hist +21 Protein Target Preparation Updated →How Blastermaster works
- 19:1819:18, 28 August 2019 diff hist +50 Protein Target Preparation Updated →How Blastermaster works
- 19:1719:17, 28 August 2019 diff hist +373 Protein Target Preparation Updated →How Blastermaster works
- 18:0218:02, 28 August 2019 diff hist +5 Protein Target Preparation Updated →How Blastermaster works
- 18:0018:00, 28 August 2019 diff hist +1 Protein Target Preparation Updated →How Blastermaster works
- 17:5717:57, 28 August 2019 diff hist −1 Protein Target Preparation Updated →How Blastermaster works
- 17:5617:56, 28 August 2019 diff hist +10 Protein Target Preparation Updated →How Blastermaster works
- 17:5617:56, 28 August 2019 diff hist +11 Protein Target Preparation Updated →How Blastermaster works
- 17:5617:56, 28 August 2019 diff hist +4,888 Protein Target Preparation Updated No edit summary
- 17:0417:04, 28 August 2019 diff hist −2 Protein Target Preparation Updated →Running Blastermaster
- 17:0417:04, 28 August 2019 diff hist +89 Protein Target Preparation Updated →Running Blastermaster
- 17:0317:03, 28 August 2019 diff hist +12 Protein Target Preparation Updated →Running Blastermaster
- 17:0217:02, 28 August 2019 diff hist +327 Protein Target Preparation Updated →Running Blastermaster
- 16:5916:59, 28 August 2019 diff hist +31 Protein Target Preparation Updated No edit summary
- 16:5816:58, 28 August 2019 diff hist +2 Using thin spheres in DOCK3.7 No edit summary
- 16:5716:57, 28 August 2019 diff hist −5,743 Protein Target Preparation →Checking Your Protein Preparation current
- 16:5616:56, 28 August 2019 diff hist +5,671 N Protein Target Preparation Updated Created page with "== Checking Your Protein Preparation == written by Reed Stein, 4/3/2019 === Electrostatics === The electrostatics grid used in docking is called "trim.electrostatics.phi". ..."
- 16:5516:55, 28 August 2019 diff hist +41 DOCK 3.7 →Prepare Receptor
- 16:5316:53, 28 August 2019 diff hist +20 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 16:5316:53, 28 August 2019 diff hist +20 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
- 16:4916:49, 28 August 2019 diff hist −2 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
- 16:4816:48, 28 August 2019 diff hist −2 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 16:4616:46, 28 August 2019 diff hist −2 Generating decoys (Reed's way) →Step 4) Copying decoy .db2.gz files into your directories
- 16:4516:45, 28 August 2019 diff hist −12 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 16:4416:44, 28 August 2019 diff hist −15 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 16:4416:44, 28 August 2019 diff hist −19 Generating decoys (Reed's way) →Step 3) Assigning decoys to ligands
- 16:4416:44, 28 August 2019 diff hist +215 Generating decoys (Reed's way) →Step 3) Assigning decoys to ligands
- 16:4316:43, 28 August 2019 diff hist −14 Generating decoys (Reed's way) →Step 4) Setting up ligand/decoy directories for building SMILES
- 16:4316:43, 28 August 2019 diff hist +215 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 00:1900:19, 28 August 2019 diff hist +30 Generating decoys (Reed's way) →Step 4) Setting up ligand/decoy directories for building SMILES
23 August 2019
- 23:3623:36, 23 August 2019 diff hist +297 Generating decoys (Reed's way) →Step 4) Setting up ligand/decoy directories for building SMILES
- 21:4021:40, 23 August 2019 diff hist +48 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 21:3921:39, 23 August 2019 diff hist +70 Generating decoys (Reed's way) →Step 4) Copying decoy .db2.gz files into your directories
- 21:3821:38, 23 August 2019 diff hist +101 Generating decoys (Reed's way) →Step 4) Setting up ligand/decoy directories for building SMILES
- 21:3721:37, 23 August 2019 diff hist +423 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 21:3621:36, 23 August 2019 diff hist +422 Generating decoys (Reed's way) →Step 3) Assigning decoys to ligands
15 August 2019
- 19:2819:28, 15 August 2019 diff hist +2 Generating decoys (Reed's way) No edit summary
- 19:2819:28, 15 August 2019 diff hist +412 Generating decoys (Reed's way) No edit summary
7 May 2019
- 22:2822:28, 7 May 2019 diff hist +12 Generating decoys (Reed's way) →Step 4) Setting up ligand/decoy directories for building SMILES
4 May 2019
- 02:5802:58, 4 May 2019 diff hist +9 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
- 02:5302:53, 4 May 2019 diff hist −58 Generating decoys (Reed's way) No edit summary
- 02:4302:43, 4 May 2019 diff hist −94 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
3 May 2019
- 23:3423:34, 3 May 2019 diff hist +4 Generating decoys (Reed's way) No edit summary
- 23:3023:30, 3 May 2019 diff hist +4 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 23:3023:30, 3 May 2019 diff hist +66 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 23:2523:25, 3 May 2019 diff hist +9 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 23:2523:25, 3 May 2019 diff hist +738 Generating decoys (Reed's way) →Step 3) Assigning decoys to ligands
- 23:2323:23, 3 May 2019 diff hist +73 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 23:2323:23, 3 May 2019 diff hist +93 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 23:2123:21, 3 May 2019 diff hist −41 Generating decoys (Reed's way) →Step 3) Assigning decoys to ligands
- 23:2123:21, 3 May 2019 diff hist +15 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 23:2023:20, 3 May 2019 diff hist +4 Generating decoys (Reed's way) →Visualizing decoy Tanimotos to ligands
- 23:2023:20, 3 May 2019 diff hist +4 Generating decoys (Reed's way) →Visualizing property distributions
- 23:1923:19, 3 May 2019 diff hist −33 Generating decoys (Reed's way) →Step 3) Assigning accepted SMILES decoys to ligand protomers
- 23:1923:19, 3 May 2019 diff hist +13 Generating decoys (Reed's way) →Step 3) Removing SMILES decoys that are too similar to known ligands
- 23:1823:18, 3 May 2019 diff hist −9 Generating decoys (Reed's way) →Step 4) Setting up ligand/decoy directories for building SMILES
- 23:1723:17, 3 May 2019 diff hist −600 Generating decoys (Reed's way) No edit summary
- 23:1723:17, 3 May 2019 diff hist −15 Generating decoys (Reed's way) →Step 3) Removing SMILES decoys that are too similar to known ligands
- 23:1723:17, 3 May 2019 diff hist −27 Generating decoys (Reed's way) →Step 2) Retrieving SMILES decoys from ZINC15
- 23:1623:16, 3 May 2019 diff hist +457 Generating decoys (Reed's way) →Step 1) Setting up SMILES directory
- 23:1223:12, 3 May 2019 diff hist +4 Generating decoys (Reed's way) →Step 4) Copying decoy .db2.gz files into your directories
- 23:1123:11, 3 May 2019 diff hist +4 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 23:1123:11, 3 May 2019 diff hist +689 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 23:0623:06, 3 May 2019 diff hist +136 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
- 23:0523:05, 3 May 2019 diff hist 0 Generating decoys (Reed's way) →Step 3) Assigning accepted protomer decoys to each ligand protomer
- 23:0523:05, 3 May 2019 diff hist −344 Generating decoys (Reed's way) No edit summary
- 23:0523:05, 3 May 2019 diff hist −29 Generating decoys (Reed's way) →Step 2) Retrieving protomer decoys from ZINC15
- 23:0423:04, 3 May 2019 diff hist +17 Generating decoys (Reed's way) No edit summary
- 23:0423:04, 3 May 2019 diff hist +165 Generating decoys (Reed's way) →Step 1) Setting up directories for Protomers
22 April 2019
- 18:0918:09, 22 April 2019 diff hist +44 Using thin spheres in DOCK3.7 No edit summary
16 April 2019
- 23:0323:03, 16 April 2019 diff hist +132 Using thin spheres in DOCK3.7 No edit summary
- 22:4622:46, 16 April 2019 diff hist +59 How to do parameter scanning →Blastermaster Parameter Scanning
- 22:4622:46, 16 April 2019 diff hist +162 How to do parameter scanning →Blastermaster Parameter Scanning
- 20:0820:08, 16 April 2019 diff hist +139 Using thin spheres in DOCK3.7 No edit summary
15 April 2019
- 16:5216:52, 15 April 2019 diff hist +7 How to do parameter scanning No edit summary
- 16:5216:52, 15 April 2019 diff hist +12 How to do parameter scanning No edit summary
- 15:5915:59, 15 April 2019 diff hist +117 How to do parameter scanning No edit summary
- 15:5415:54, 15 April 2019 diff hist +1,649 How to do parameter scanning No edit summary
12 April 2019
- 19:0219:02, 12 April 2019 diff hist +92 Adding Static Waters to the Protein Structure No edit summary current
- 19:0019:00, 12 April 2019 diff hist +12 Adding Static Waters to the Protein Structure No edit summary
- 19:0019:00, 12 April 2019 diff hist +155 Adding Static Waters to the Protein Structure No edit summary