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13 February 2014

12 February 2014

30 January 2014

  • 17:1717:17, 30 January 2014 diff hist +166 N Disk fullCreated page with "if the disk is full, here is how you find out who the major culprits are (example here is /raid1) sudo /usr/sbin/repquota /raid1 | sort -nk3 [{Category:Internal]]"

29 January 2014

  • 20:4520:45, 29 January 2014 diff hist +862 N Get ZINC under program controlCreated page with "More things to not forget <pre> teague:~$ wget -q --post-file smiles-to-lookup.smi "http://zinc.uoft.bkslab.org:8080/inchi -O- ZINC01586379 ZINC00000053 ZINC15202372 teague:..."
  • 20:4320:43, 29 January 2014 diff hist +825 N Ring SQL queryCreated page with "From his bestseller, 101 things to not forget <pre> This just came out of some debugging. Thought you may be interested. It will return the number of occurrences of a particu..."
  • 20:4020:40, 29 January 2014 diff hist +1,700 N Cassidy clusteringCreated page with "These are notes to myself from Teague/Cassidy for the new cluster. [[Category::Internal]] I've written some code to generate Daylight-like fingerprints (Base-64) from the ..."

27 January 2014

22 January 2014

15 January 2014

  • 19:4319:43, 15 January 2014 diff hist +797 N Zinc exact lookup by httpCreated page with "New ZINC lookup features wget -q --post-file smiles-to-lookup.smi "http://zinc.uoft.bkslab.org:8080/inchi -O- ZINC01586379 ZINC00000053 ZINC15202372 wget -q --post-file..."

10 January 2014

9 January 2014

9 December 2013

12 November 2013

  • 19:4219:42, 12 November 2013 diff hist +1,009 N Metabolites databasesCreated page with "There are two three kinds of metabolite docking databases at docking.org, and from each type, there are multiple actual databases. *NB this work is still in progress* = Gr..."

11 November 2013

6 November 2013

4 November 2013

2 November 2013

1 November 2013

  • 23:4723:47, 1 November 2013 diff hist +763 N ZINC apiCreated page with "Here we explain how to access ZINC via an application programming interface (api) Please note that this is for zinc13 and beyond that is based on rdkit and psql. Previously,..."

31 October 2013

22 August 2013

  • 18:1518:15, 22 August 2013 diff hist 0 Tool1No edit summary
  • 18:1518:15, 22 August 2013 diff hist +600 N Tool1Created page with "= Tool2 aka SEAvis = = Question = What compounds contribute most to the SEA score between any two targets? = Approach = We have a tool (contact John for details). * Sp..."
  • 18:1118:11, 22 August 2013 diff hist +1,932 N Tool2Created page with " = Question = What is the most similar compound from any one catalog to my molecule? This could be any single catalog in ZINC. Currently you must specify the short name of t..."

21 August 2013

14 August 2013

24 July 2013

16 July 2013

15 July 2013

10 July 2013

4 July 2013

  • 17:0717:07, 4 July 2013 diff hist +724 N ZINC via curlCreated page with "You can query ZINC using curl as follows: = Download all the IDs in a file = curl -s --data-urlencode zinc.ids="$( cat test.list )" -d page.format=properties http://zinc...."
  • 17:0217:02, 4 July 2013 diff hist +657 N MicromedexCreated page with "= Micromedex = We have access to Micromedex. * Micromedex® Drug Information – free to everyone, no password required. * Micromedex® Drug Interactions – free to U of ..."

26 May 2013

19 April 2013

17 April 2013

8 April 2013

  • 14:3714:37, 8 April 2013 diff hist +409 N Template:Main otherCreated page with "{{#switch: <!--If no or empty "demospace" parameter then detect namespace--> {{#if:{{{demospace|}}} | {{lc: {{{demospace}}} }} <!--Use lower case "demospace"--> | ..." current

6 April 2013

5 April 2013

27 March 2013

27 February 2013

25 February 2013

22 February 2013

20 February 2013

  • 23:2823:28, 20 February 2013 diff hist +711 N ZINC Biogenic LibrariesCreated page with "The ZINC Natural Product Like library is a collection of commercially available compounds that are natural products, strongly ressemble natural products, or have signifcant su..."

18 February 2013

12 February 2013

28 January 2013

23 January 2013

22 January 2013

  • 01:5401:54, 22 January 2013 diff hist +1,622 N Welcome group membersCreated page with "Welcome to the lab. This page is designed for new group members, our collaborators and anyone else who wishes to access our cluster via ssh. = Obtaining credentials = Please..."
  • 01:4001:40, 22 January 2013 diff hist +1,242 N Welcome web userCreated page with "Welcome to the BKSLAB server. We offer the following: = Services = * 1. Public websites: ZINC, DOCK Blaster, SEA, DUD/DUDE, Advisor. BKSLAB home page. * 2. Software to down..."

20 January 2013

16 January 2013

2 December 2012

21 November 2012

18 November 2012

23 October 2012

22 October 2012

21 October 2012

19 October 2012

18 October 2012

  • 21:4021:40, 18 October 2012 diff hist +723 Customize shellNo edit summary
  • 21:3021:30, 18 October 2012 diff hist +1,372 N Customize shellCreated page with "How to customize .cshrc There are four parts: 1) set up a custom DOCK_BASE, SOFT if required 2) set up standard shell variables (vars.csh) 3) custom paths, environment 4) def..."
  • 21:2321:23, 18 October 2012 diff hist +757 N Checkout dockenvCreated page with "= How to check out and set up dockenv. = cd mkdir -p code cd code svn co file:///raid4/svn/dockenv/trunk dockenv cd ln -s code/dockenv dockenv Then edit .cshrc and add..."
  • 21:1421:14, 18 October 2012 diff hist +127 N SysadminCreated page with "The current sysadmins are Teague Sterling, Therese Demers and John Irwin. You can write them all at sysadmins (at) docking.org."

15 October 2012

12 October 2012

11 October 2012

  • 23:5923:59, 11 October 2012 diff hist +232 N Template:ErrorCreated page with "<{{#switch:{{lc:{{{tag}}}}} |p=p |span=span |div=div |#default=strong }} class="error">{{{message|{{{1}}}}}}</{{#switch:{{lc:{{{tag}}}}} |p=p |span=span |div=div |#def..." current
  • 23:5623:56, 11 October 2012 diff hist +746 N Template:TlxCreated page with "<includeonly><code><nowiki>{{</nowiki>{{#if:{{{subst|}}}|subst:}}[[{{{LANG|}}}{{{SISTER|}}}{{ns:Template}}:{{{1|}}}|{{{1|}}}]]<!-- -->{{#if:{{{2|}}}| &#1..." current
  • 23:5323:53, 11 October 2012 diff hist +2,135 N Template:If pagenameCreated page with "{{#if:x <!--Remove surrounding whitespace--> | <!--Check for match with full pagename--> {{{ {{#if:{{{page|}}}| {{{page|}}} | {{FULLPAGENAME}} }} <!--Has data, or is emp..." current
  • 23:5323:53, 11 October 2012 diff hist +762 N Template:Category handler/blacklistCreated page with "<noinclude>'''Actual code of this blacklist:'''<pre></noinclude>{{if pagename <!-- Start of blacklist --> | Main Page = hide <!-- Don't categorise the main page --> <!-- D..." current
  • 23:5323:53, 11 October 2012 diff hist +3,251 N Template:Category handlerCreated page with "{{#if: {{#ifeq: {{lc: {{{nocat|}}} }} | true | dontcat <!--"nocat=true", don't categorize--> }}{{#ifeq: {{lc: {{{categories|}}} }} | no | dontcat }}{{#switch: {{l..." current
  • 23:4823:48, 11 October 2012 diff hist +76 N Template:HatnoteCreated page with "<div class="dablink">{{{1}}}</div><noinclude> {{documentation}} </noinclude>" current
  • 23:4823:48, 11 October 2012 diff hist +400 N Template:TranscludeCreated page with "{{#switch: {{NAMESPACE: {{{1}}} }} |#default = {{FULLPAGENAME: {{{1}}} }} <!-- eg "User:Foo" --> |{{ns:0}} = {{#ifeq: {{NAMESPACE: {{{1}}} }} | {{NAMESPACE: Template{{{..." current
  • 23:4623:46, 11 October 2012 diff hist +1,111 N Template:NavbarCreated page with "<includeonly><div class="noprint plainlinks hlist navbar {{#if:{{{mini|}}}|mini}}" style="{{{style|}}}"><!-- -->{{#if:{{{mini|}}}{{{plain|}}}|<!--nothing-->|<!--else: --><spa..." current
  • 23:4523:45, 11 October 2012 diff hist +1,466 N Template:Namespace detectCreated page with "{{#switch: {{lc: <!--Lower case the result--> <!--If no or empty "demospace" parameter then detect namespace--> {{#if:{{{demospace|}}} | {{{demosp..." current
  • 23:4323:43, 11 October 2012 diff hist +227 N Template:ResizeCreated page with "{{#if:{{{2|}}} |<span style="font-size:{{{1|}}};">{{{2|}}}</span> |<span style="font-size:90%;">{{{1}}}</span> }}<noinclude> {{documentation}} <!--PLEASE ADD CATEGORIES AND IN..." current
  • 23:4323:43, 11 October 2012 diff hist +4,608 N Template:Template categoryCreated page with "{{Cmbox |type = notice |image = 44px|Template braces|link= |text = <div> <table style="width:98%; background:none;" cellspacing="0"> <!-----..." current
  • 23:4223:42, 11 October 2012 diff hist +1,711 N Template:CmboxCreated page with "<table class="plainlinks cmbox {{#switch:{{{type|}}} | speedy = cmbox-speedy | delete = cmbox-delete | content = cmbox-content | style = cmbox-style | move ..." current
  • 23:3723:37, 11 October 2012 diff hist +197 N Template:PurgeCreated page with "<span class="noprint plainlinks purgelink">[{{fullurl:{{{page|{{FULLPAGENAME}}}}}|action=purge}} <span title="Purge this page">{{{1|Purge}}}</span>]</span><noinclude> {{docume..." current
  • 23:3523:35, 11 October 2012 diff hist +6,876 N Template:Pp-metaCreated page with "{{#ifeq:{{#switch:{{lc:{{{type}}}}} |move=<!-- -->{{#ifeq: {{#switch:{{lc:{{{demolevel|undefined}}}}} |semi |autoconfirmed=autoconfirmed |admi..." current
  • 23:3423:34, 11 October 2012 diff hist +76 N Template:TlCreated page with "{{[[Template:{{{1}}}|{{{1}}}]]}}<noinclude> {{Documentation}} </noinclude>" current
  • 23:3423:34, 11 October 2012 diff hist +232 N Template:Documentation/template pageCreated page with "{{#switch: {{SUBPAGENAME}} | sandbox | testcases = {{BASEPAGENAME}} | #default = {{PAGENAME}} }}<noinclude>{{documentation|content= This subtemplate of {{tl|documentation}} is..." current
  • 23:3423:34, 11 October 2012 diff hist +1,344 N Template:FmboxCreated page with "<table {{#if:{{{id|}}}|id="{{{id|}}}"}} class="plainlinks fmbox {{#switch:{{{type|}}} | warning = fmbox-warning | editnotice = fmbox-editnotice | system <!-- syste..." current
  • 23:3323:33, 11 October 2012 diff hist +4,169 N Template:Documentation/end boxCreated page with "<noinclude><div></noinclude><div style="clear: both;"></div><!--So right or left floating items don't stick out of the doc box.--> </div><!--End of green doc box--><!-- Link..." current
  • 23:3323:33, 11 October 2012 diff hist +880 N Template:Documentation/end box2Created page with "{{documentation/end box | preload = {{{preload|}}} <!--Allow custom preloads--> | content = {{{content|}}} | link box = {{{link box|}}} <!--So "link box=off" works--> | d..." current
  • 23:3323:33, 11 October 2012 diff hist +302 N Template:Documentation/docspaceCreated page with "{{#switch: {{SUBJECTSPACE}} | {{ns:0}} | {{ns:File}} | {{ns:MediaWiki}} | {{ns:Category}} = {{TALKSPACE}} | #default = {{SUBJECTSPACE}} }}<noinclude> {{documentation..." current
  • 23:3223:32, 11 October 2012 diff hist +435 N Template:Template otherCreated page with "{{#switch: <!--If no or empty "demospace" parameter then detect namespace--> {{#if:{{{demospace|}}} | {{lc: {{{demospace}}} }} <!--Use lower case "demospace"--> | {..." current
  • 23:3223:32, 11 October 2012 diff hist +3,278 N Template:Pp-templateCreated page with "<includeonly>{{pp-meta |type={{#switch:{{{demolevel|{{#ifeq:{{PROTECTIONLEVEL:edit}}-{{PROTECTIONLEVEL:move}}|-sysop|move|{{PROTECTIONLEVEL:edit}}}}}}} |semi |autoconfir..." current
  • 23:3123:31, 11 October 2012 diff hist +1,785 N Template:Documentation/start boxCreated page with "<!-- Start of green doc box --><div id="template-documentation" class="template-documentation iezoomfix"><!-- Add the heading at the top of the doc box: -->{{#ifeq: {{{hea..." current
  • 23:3123:31, 11 October 2012 diff hist +641 N Template:Documentation/start box2Created page with "{{documentation/start box | preload = {{{preload|}}} <!--Allow custom preloads--> | heading = {{{heading|¬}}} <!--Empty but defined means no header--> | heading-style = {..." current
  • 23:3123:31, 11 October 2012 diff hist +2,382 N Template:DocumentationCreated page with "<!-- Automatically add {{template sandbox notice}} when on a /sandbox page. -->{{#ifeq: {{SUBPAGENAME}} | sandbox | <div style="clear: both;"></div>{{template sandbox notice..."
  • 23:3023:30, 11 October 2012 diff hist +97 N Template:TdCreated page with "<includeonly><td style="width:1px;"></td></includeonly><noinclude> {{documentation}} </noinclude>" current
  • 23:3023:30, 11 October 2012 diff hist +821 N Template:Side boxCreated page with "<table class="metadata mbox-small{{#ifeq:{{lc:{{{position|}}}}}|left|-left}} {{{class|}}}" style="border:1px solid #aaa; background-color:#f9f9f9; {{{style|}}}"> {{#if:{{{abov..." current
  • 23:3023:30, 11 October 2012 diff hist +1,253 N Template:SisterCreated page with "{{Side box | position = {{{position|}}} | image = {{#switch: {{{image|}}} | none = <!-- "image=none", do nothing --> | = <!-- No image fed, select an imag..." current
  • 23:2923:29, 11 October 2012 diff hist +613 N Template:WiktionaryCreated page with "{{sister |position={{{position|}}} |project=wiktionary |text=Look up '''''[[wiktionary:{{{1|Special:Search/{{lc:{{SUBPAGENAME}}}}}}}|{{{1|{{lc:{{SUBPAGENAME}}}}}}}]]'''''{{#if..." current
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