Difference between revisions of "Schrodinger notes"

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Make sure the port is open in iptables
Make sure the port is open in iptables
  source /nfs/software/schrodinger/env.sh
  source /raid3/software/schrodinger/current.sh  
Try some combination of the following:
Try some combination of the following:

Revision as of 13:30, 18 September 2018

SCHRODINGER - getting it running

Get a License File:

Get an email about Schrodinger license keys ready for retrieval.
Click the link that follows: "please use this form to generate the license file:"

In the License Retrieval Assistant, make sure you have the following information for the respective categories:
Host ID: 0015605f526c
Machine Name: nis.compbio.ucsf.edu
FLEXIm Server Port: 2700


Cluster 0, all schrodinger files are located locally on nfshead2:/raid3 but the commands below should be executed on nis as user tdemers.

Make sure that the variable $LM_LICENSE_FILE has port@same_exact_server_name_as_in_license_file. The license.dat file must contain:

SERVER nis.compbio.ucsf.edu 0015605f526c 27000

Make sure the port is open in iptables

source /raid3/software/schrodinger/current.sh 

Try some combination of the following:

$SCHRODINGER/licadmin STAT -c $SCHRODINGER/license.dat
$SCHRODINGER/licadmin REREAD -l $SCHRODINGER/lmgrd.log -c $SCHRODINGER/license.dat
$SCHRODINGER/licadmin SERVERUP -l $SCHRODINGER/lmgrd.log -c $SCHRODINGER/license.dat

Installing Schrodinger

First you need to go to the website and download the software. You should end up with two files: Schrodinger Worflow … .zip and Schrodinger Suites …..tar scp both these files to the server, to the schrodinger directory. On the server, in the schrodinger directory mkdir MonthYear. cd into that directory Untar the tar file and run the INSTALL script. At the end you’ll see something like this:

*) Licensing
   You will need one or more licenses before you can run the
   software you have just installed. 
Please note the following information, which you will need in order to generate a license key:
Host ID: 001e0bd543b8 Machine name: nfshead2.bkslab.org
If you are not performing this installation on your license server, you will need the output of:
$SCHRODINGER/machid -hostid