Difference between revisions of "Rsyncing zinc15"

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  rsync -L  -a --progress  --include="[ABCDEFG][A-G]*.db2.gz" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-3D/  zinc
 
  rsync -L  -a --progress  --include="[ABCDEFG][A-G]*.db2.gz" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-3D/  zinc
  
# Example:
+
# Example (download 3D):
 
Let's say, you are in folder /ZINC15DB, which contains your 3D database (named as 3D), and you want to sync only *.db2.gz files from CA-tranche, then:  
 
Let's say, you are in folder /ZINC15DB, which contains your 3D database (named as 3D), and you want to sync only *.db2.gz files from CA-tranche, then:  
 
  rsync -L  -a --progress --include="*/" --include="CA*.db2.gz" --exclude="*" rsync://files.docking.org/ZINC-3D/CA 3D
 
  rsync -L  -a --progress --include="*/" --include="CA*.db2.gz" --exclude="*" rsync://files.docking.org/ZINC-3D/CA 3D

Revision as of 08:25, 3 September 2019

A few examples below: This is how you set up a ZINC Mirror. I am looking at you Uppsala, Beijing, and Kiev.

  1. what is available?
rsync --list-only rsync://files.docking.org
  1. download 2D
rsync -L  -a --progress  --include="[ABCDEFG][A-G]*.smi" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-2D/ zinc
  1. download 3D
rsync -L  -a --progress  --include="[ABCDEFG][A-G]*.db2.gz" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-3D/  zinc
  1. Example (download 3D):

Let's say, you are in folder /ZINC15DB, which contains your 3D database (named as 3D), and you want to sync only *.db2.gz files from CA-tranche, then:

rsync -L  -a --progress --include="*/" --include="CA*.db2.gz" --exclude="*" rsync://files.docking.org/ZINC-3D/CA 3D