Rsyncing zinc15: Difference between revisions
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rsync -L -a --progress --include="[ABCDEFG][A-G]*.db2.gz" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-3D/ zinc | rsync -L -a --progress --include="[ABCDEFG][A-G]*.db2.gz" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-3D/ zinc | ||
# Example: | # Example (download 3D): | ||
Let's say, you are in folder /ZINC15DB, which contains your 3D database (named as 3D), and you want to sync only *.db2.gz files from CA-tranche, then: | Let's say, you are in folder /ZINC15DB, which contains your 3D database (named as 3D), and you want to sync only *.db2.gz files from CA-tranche, then: | ||
rsync -L -a --progress --include="*/" --include="CA*.db2.gz" --exclude="*" rsync://files.docking.org/ZINC-3D/CA 3D | rsync -L -a --progress --include="*/" --include="CA*.db2.gz" --exclude="*" rsync://files.docking.org/ZINC-3D/CA 3D | ||
Revision as of 15:25, 3 September 2019
A few examples below: This is how you set up a ZINC Mirror. I am looking at you Uppsala, Beijing, and Kiev.
- what is available?
rsync --list-only rsync://files.docking.org
- download 2D
rsync -L -a --progress --include="[ABCDEFG][A-G]*.smi" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-2D/ zinc
- download 3D
rsync -L -a --progress --include="[ABCDEFG][A-G]*.db2.gz" --exclude="[HIJK]*" rsync://files.docking.org/ZINC-3D/ zinc
- Example (download 3D):
Let's say, you are in folder /ZINC15DB, which contains your 3D database (named as 3D), and you want to sync only *.db2.gz files from CA-tranche, then:
rsync -L -a --progress --include="*/" --include="CA*.db2.gz" --exclude="*" rsync://files.docking.org/ZINC-3D/CA 3D