Repackaging DB2 DOCK38
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The following is a script for repackaging 3D pipeline results. First, here is the script:
#!/bin/bash # make_tarballs.bash # required parameter RESULT_DIRECTORY=$1 # optional parameters WORKING_DIRECTORY=${WORKING_DIRECTORY-/tmp/$(whoami)} PACKAGES_PER_PACKAGE=${PACKAGES_PER_PACKAGE-100} PACKAGE_TYPE=${PACKAGE_TYPE-db2.gz} PACKAGE_TYPE_SHORT=$(echo $PACKAGE_TYPE | cut -d'.' -f1) echo WORKING_DIRECTORY=$WORKING_DIRECTORY mkdir -p $WORKING_DIRECTORY && cd $WORKING_DIRECTORY mkdir -p output working tarball_split_list echo finding find $RESULT_DIRECTORY -name '*.tar.gz' > tarball_list.txt echo splitting split -l $PACKAGES_PER_PACKAGE tarball_list.txt tarball_split_list/ echo working cd working for f in ../tarball_split_list/*; do for tb in $(cat $f); do tar --transform='s/^.*\///' -xf $tb '*.'$PACKAGE_TYPE 2>/dev/null done tar -czf $(basename $f).$PACKAGE_TYPE_SHORT.tar.gz *.$PACKAGE_TYPE mv $(basename $f).$PACKAGE_TYPE_SHORT.tar.gz ../output rm *.$PACKAGE_TYPE echo $(basename $f) done cd .. echo Done! Results in $PWD/output
Now, an example usage:
[user@gimel5 ~] bash make_tarballs.bash /nfs/exb/zinc22/tarballs/H17P200_H19P400.smi.batch-3d.d/out/aaa.d finding splitting working aa ab ac ad ae af ag ah ai aj Done! Results in /tmp/user/output