Reactivity axis

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Here we describe the "clean" axis in the exported subsets of ZINC15.

Traditionally, ZINC standard subsets included: A, B, C, D, E.

ZINC "clean" subsets were just A, B, C, D.

The Clean Axis

Class Nickname Description / How computed
A Anodyne No flags of any kind set
Unnecessarily complex The worst feature is the molecules are over decorated e.g. too many chlorides
C Chromophore Worst problem is a chromophore that could interfere with some asays
D Any PAINS Any pains pattern not covered in E,F,G,H
E mildly electrophilic or nucleophilic aldhydes, thiols, michael acceptors, epoxides
F strongly electrophilic or nucleophilic alpha halo ketones, alkyl halides
G unstable in buffer typically, reagents used in synthesis, but could be used for covalent binding. e.g. boronic acids
H nonsensical idea from the PAINS papers