ROCS
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This is more of a guide to how to run ROCS on the Shoichet cluster than what ROCS is, for that, see the OpenEye webpage: http://www.eyesopen.com/products/applications/rocs.html
Preparing a database: http://www.eyesopen.com/docs/rocs/3.0.0/html/usage.html
Running ROCS: (see the bottom for the commandline example) http://www.eyesopen.com/docs/rocs/3.0.0/html/tutorial.html#tutorial5