Protein-Protein Docking: Difference between revisions
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renum.pl - renumber atoms prior to asp.com | renum.pl - renumber atoms prior to asp.com | ||
(ccp4:pdbset to remove H atoms for asp.com) | (ccp4:pdbset to remove H atoms for asp.com) | ||
[[Category:Obsolete]] |
Latest revision as of 17:41, 15 February 2014
Scripts for using protein protein docking
fitatom.exe - A McLachlan's program bks 1996
maksph - jji code to make focusing spheres from main spheres for protein work
access - toolbox originally from Tim Richmond for computing surface exposure compiled as SGI binaries asp.com - compute exposed residues as a basis for sampling by flex-prot.csh dcom - protein OUTDOCK analysis dcom_mut - dcom for mutants flex-prot.csh - generate base docking database from mol2 and exp60 prot2hier - called by flex-prot.csh protein_c.com - called by flex-prot.csh protein_c.sed - called by protein_c.com protein.spl - use from sybyl to make mol2 from pdb of protein scripts/ - flex-prot.spl & prot.table.dml - used by flex-prot.csh syb_isdone - called by flex-prot.csh renum.pl - renumber atoms prior to asp.com (ccp4:pdbset to remove H atoms for asp.com)