Problems: Difference between revisions

Latest revision as of 03:47, 13 March 2014

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-This is the general problem page at docking.org.  There are also specific problem pages as follows:
+#REDIRECT [[Category:Problems]]
-* [[DOCK Blaster:Problems]]
-* [[DUD:Problems]]
-* [[DOCK:Problems]]
-* [[ZINC:Problems]]
-= Technical Problems =
-Technical problems are ones where we think we know pretty well exactly how to solve them, algorithmically.  Scientific problems may be technical, but are differentiated because I cannot describe algorithmically how to solve them.  Instead, we should take an experimental approach, probably trying at least two different ways, and seeing which works best. Philosophical problems in this context means that I am not even sure how to phrase a scientific question or a testable hypothesis, but I recognize that there is a problem.
-{{TOCright}}
-== DOCK Blaster ==
-* tutorials
-* protocols
-* get the paper out
-== DOCK 6.2 ==
-* new release
-* documentation
-== DOCK 3.5.54 ==
-* prepare new distribution
-* "collisions"
-* inline out of box detection
-* ligand internal energy
-* write out multiple structures for PLOP
-== DUD ==
-* more systems
-* get the new paper out
-* new ways of choosing decoys
-* new release
-== DOCK Tools ==
-* documentation
-== Infrastructure ==
-* more disk space on line
-= Scientific Problems =
-== Docking ==
-* treatment of entropy
-* treatment of receptor desolvation
-* treatment of induced-fit effects
-* ligand internal energy
-= Philosophical Problems =
-*
-*
-*
-[[Category:Problems]]