Manage Lab Websites

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List of Websites

Website Machine:Port Run on Hosted in (httpd/conf.d) Working
Amis: https://amis.docking.org/ Files2 (169.230.75.3) Yes
Arthor: https://arthor.docking.org/ n-1-136:8080 Tomcat Files2 (169.230.75.3) Yes
BKSLab: http://www.bkslab.org/ gimel:5002 Supervisord Tau (169.230.26.43) Yes
Blaster: https://blaster.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Cartblanche: https://cartblanche.docking.org/ Files2 (169.230.75.3)
Covalent: http://covalent.docking.org/ Tau (169.230.26.43, can not be moved to files2)
DSF: https://dsf.docking.org/ Tau (169.230.26.43)
Duc: https://duc.docking.org/ Tau (169.230.26.43)
IrwinLab: http://irwinlab.compbio.ucsf.edu/ gimel:5004 Supervisord Tau (169.230.26.43)
Excipients, TLDR (formerly Tools18) gimel2 : port 8093, 5000 Supervisord
Transportal omega : port 8123 screen
SEA gimel2 : port 6068 screen

Restart Instructions after UPS

For websites running on Screen

  • Become khtang on gimel
$ screen -ls
21546.SEA	(Detached)
23528.transportal	(Detached)
22877.conference	(Detached)
16132.upload	(Detached)
24786.oeb_lib_building	(Detached)
4796.ShopAppMol	(Detached)
19162.FASTROCS-server	(Detached)
$ screen -r <screen_id>

SEA

Become www on gimel2

$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
$ make SEAserver-stop-devel
$ make all
$ make SEAserver-start-devel

Transportal

$ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
$ source venv/bin/activate.csh
$ python manage.py runserver 0.0.0.0:8123

For websites running on Supervisord

  • Become root on server the website runs on
$ supervisorctl status
$ supervisorctl restart <name>
  i.e 
$ supervisorctl restart bks-lab
$ supervisorctl restart tools18