Manage Lab Websites: Difference between revisions

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== List of Websites ==
== List of Websites ==
Last updated on 10/20/2020
{| class="wikitable"
{| class="wikitable"
|Website
!Website
|Server
!Machine:Port
|Run on
!Run on
!Hosted in (httpd/conf.d)
!Working
|-
|-
|BKSLab, IrwinLab
|Amis: https://amis.docking.org/
|gimel : port 5002, 5004
|
|
|Files2 (169.230.75.3)
|Yes
|-
|Arthor: https://arthor.docking.org/
|n-1-136:8080
|Tomcat
|Files2 (169.230.75.3)
|Yes
|-
|BKSLab: http://www.bkslab.org/
|gimel:5002
|Supervisord
|Supervisord
|Tau (169.230.26.43)
|Yes
|-
|Blaster: https://blaster.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|Cartblanche: https://cartblanche.docking.org/
|gimel:5066-5067
|
|Files2 (169.230.75.3)
|Yes
|-
|Covalent: http://covalent.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|DSF: https://dsf.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|-
|Excipients, TLDR (formerly Tools18)
|Duc: https://duc.docking.org/
|gimel2 : port 8093, 5000
|
|
|Tau (169.230.26.43)
|No
|-
|Dud: https://dud.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|Dude18: http://dude18.docking.org/
|
|
|Tau (169.230.26.43)
|No
|-
|Dude: http://dude.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|Dudez: http://dudez.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Excipients: http://excipients.docking.org/
|gimel:8093
|
|Files2 (169.230.75.3)
|Yes
|-
|Gitlab: https://gitlab.docking.org/
|
|
|Tau (169.230.26.43)
|No
|-
|HG: https://hg.docking.org/
|
|
|Tau (169.230.26.43)
|showing wrong website
|-
|IrwinLab: http://irwinlab.compbio.ucsf.edu/
|gimel:5004
|Supervisord
|Supervisord
|Tau (169.230.26.43)
|Yes
|-
|Khanh: http://khanh.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Metabolite: http://metabolite.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|showing wrong website
|-
|Deepchemworkshop: http://deepchemworkshop.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Prices: http://prices.docking.org/
|gimel:5022
|
|Tau (169.230.26.43)
|No
|-
|Psicquic: http://psicquic.docking.org/
|
|
|Tau (169.230.26.43)
|Yes (broken???)
|-
|Reactor: http://reactor.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Transporters: http://transporters.ucsf.bkslab.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Sea16: http://sea16.docking.org/
|gimel:8086
|
|Files2 (169.230.75.3)
|Yes
|-
|SEC: http://sec.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Smallworld Public: http://sw.docking.org/
|abacus:5020
|screen
|Files2 (169.230.75.3)
|Yes
|-
|-
|Transportal
|Smallworld Private: http://swp.docking.org/
|omega : port 8123
|abacus:8080
|screen
|screen
|Files2 (169.230.75.3)
|Yes
|-
|-
|SEA
|Smallworld Super Private: http://swc.docking.org/
|gimel2 : port 6068
|abacus:5099
|screen
|screen
|Files2 (169.230.75.3)
|Yes
|-
|Stats: http://stats.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|No
|-
|Symp: http://symp.docking.org/
|
|
|Tau (169.230.26.43)
|No
|-
|TLDR http://tldr.docking.org/
|gimel:5011
|Supervisord
|Tau (169.230.26.43)
|Yes
|-
|Tool-Selector: http://tool-selector.ucsf.bkslab.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Transportal: http://transportal.docking.org/
|n-9-22 : port 8123
|screen
|Tau (169.230.26.43)
|Yes
|-
|Upload: http://upload.docking.org/
|
|
|Tau (169.230.26.43)
|Yes
|-
|Zinc12: http://zinc12.docking.org/
|
|
|Tau (169.230.26.43, can not be moved to files2)
|Yes
|-
|-
|Zinc15: http://zinc.docking.org/
|
|
|Files2 (169.230.75.3)
|Yes
|-
|Zinc20: http://zinc20.docking.org/
|
|
|Files2 (169.230.75.3)
|Yes
|-
|-
|}
|}


== Restart Instructions ==
== Restart Instructions after UPS==
=== For websites running on Screen ===
=== For websites running on Screen ===
* Become khtang on gimel
* Become khtang on gimel
Line 39: Line 249:


==== SEA ====
==== SEA ====
Become www on gimel2
$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
  $ make SEAserver-stop-devel
  $ make SEAserver-stop-devel
  $ make all
  $ make all
Line 45: Line 260:
==== Transportal ====
==== Transportal ====
  $ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
  $ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
$ source venv/bin/activate.csh
  $ python manage.py runserver 0.0.0.0:8123
  $ python manage.py runserver 0.0.0.0:8123


=== For websites running on Supervisord ===
=== For websites running on Supervisord ===
* Become root on server the website runs on
* Become root on server the website runs on
$ supervisorctl status
$ supervisorctl restart <name>
  i.e
$ supervisorctl restart bks-lab
$ supervisorctl restart tools18


[[Category : Khanh]]
[[Category : Khanh]]

Revision as of 16:49, 20 October 2020

List of Websites

Last updated on 10/20/2020

Website Machine:Port Run on Hosted in (httpd/conf.d) Working
Amis: https://amis.docking.org/ Files2 (169.230.75.3) Yes
Arthor: https://arthor.docking.org/ n-1-136:8080 Tomcat Files2 (169.230.75.3) Yes
BKSLab: http://www.bkslab.org/ gimel:5002 Supervisord Tau (169.230.26.43) Yes
Blaster: https://blaster.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Cartblanche: https://cartblanche.docking.org/ gimel:5066-5067 Files2 (169.230.75.3) Yes
Covalent: http://covalent.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
DSF: https://dsf.docking.org/ Tau (169.230.26.43) Yes
Duc: https://duc.docking.org/ Tau (169.230.26.43) No
Dud: https://dud.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Dude18: http://dude18.docking.org/ Tau (169.230.26.43) No
Dude: http://dude.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Dudez: http://dudez.docking.org/ Tau (169.230.26.43) Yes
Excipients: http://excipients.docking.org/ gimel:8093 Files2 (169.230.75.3) Yes
Gitlab: https://gitlab.docking.org/ Tau (169.230.26.43) No
HG: https://hg.docking.org/ Tau (169.230.26.43) showing wrong website
IrwinLab: http://irwinlab.compbio.ucsf.edu/ gimel:5004 Supervisord Tau (169.230.26.43) Yes
Khanh: http://khanh.docking.org/ Tau (169.230.26.43) Yes
Metabolite: http://metabolite.docking.org/ Tau (169.230.26.43, can not be moved to files2) showing wrong website
Deepchemworkshop: http://deepchemworkshop.docking.org/ Tau (169.230.26.43) Yes
Prices: http://prices.docking.org/ gimel:5022 Tau (169.230.26.43) No
Psicquic: http://psicquic.docking.org/ Tau (169.230.26.43) Yes (broken???)
Reactor: http://reactor.docking.org/ Tau (169.230.26.43) Yes
Transporters: http://transporters.ucsf.bkslab.org/ Tau (169.230.26.43) Yes
Sea16: http://sea16.docking.org/ gimel:8086 Files2 (169.230.75.3) Yes
SEC: http://sec.docking.org/ Tau (169.230.26.43) Yes
Smallworld Public: http://sw.docking.org/ abacus:5020 screen Files2 (169.230.75.3) Yes
Smallworld Private: http://swp.docking.org/ abacus:8080 screen Files2 (169.230.75.3) Yes
Smallworld Super Private: http://swc.docking.org/ abacus:5099 screen Files2 (169.230.75.3) Yes
Stats: http://stats.docking.org/ Tau (169.230.26.43, can not be moved to files2) No
Symp: http://symp.docking.org/ Tau (169.230.26.43) No
TLDR http://tldr.docking.org/ gimel:5011 Supervisord Tau (169.230.26.43) Yes
Tool-Selector: http://tool-selector.ucsf.bkslab.org/ Tau (169.230.26.43) Yes
Transportal: http://transportal.docking.org/ n-9-22 : port 8123 screen Tau (169.230.26.43) Yes
Upload: http://upload.docking.org/ Tau (169.230.26.43) Yes
Zinc12: http://zinc12.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Zinc15: http://zinc.docking.org/ Files2 (169.230.75.3) Yes
Zinc20: http://zinc20.docking.org/ Files2 (169.230.75.3) Yes

Restart Instructions after UPS

For websites running on Screen

  • Become khtang on gimel
$ screen -ls
21546.SEA	(Detached)
23528.transportal	(Detached)
22877.conference	(Detached)
16132.upload	(Detached)
24786.oeb_lib_building	(Detached)
4796.ShopAppMol	(Detached)
19162.FASTROCS-server	(Detached)
$ screen -r <screen_id>

SEA

Become www on gimel2

$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
$ make SEAserver-stop-devel
$ make all
$ make SEAserver-start-devel

Transportal

$ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
$ source venv/bin/activate.csh
$ python manage.py runserver 0.0.0.0:8123

For websites running on Supervisord

  • Become root on server the website runs on
$ supervisorctl status
$ supervisorctl restart <name>
  i.e 
$ supervisorctl restart bks-lab
$ supervisorctl restart tools18