Difference between revisions of "Manage Lab Websites"

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(List of Websites)
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== List of Websites ==
 
== List of Websites ==
* SEA
+
Last updated on 10/20/2020
* Transportal
+
* Excipients
+
* BKSLab
+
* IrwinLab
+
* TLDR (formerly known as Tools18)
+
 
+
 
{| class="wikitable"
 
{| class="wikitable"
|Website
+
!Website
|Server
+
!Machine:Port
|Run on
+
!Run on
 +
!Hosted in (httpd/conf.d)
 +
!Working
 
|-
 
|-
|BKSLab, IrwinLab
+
|Amis: https://amis.docking.org/
|gimel
+
|
 +
|
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|Arthor: https://arthor.docking.org/
 +
|n-1-136:8080
 +
|Tomcat
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|BKSLab: http://www.bkslab.org/
 +
|gimel:5002
 
|Supervisord
 
|Supervisord
 +
|Tau (169.230.26.43)
 +
|Yes
 
|-
 
|-
|Excipients, TLDR
+
|Blaster: https://blaster.docking.org/
|gimel2
+
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|Yes
 +
|-
 +
|Cartblanche: https://cartblanche.docking.org/
 +
|gimel:5066-5067
 +
|
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|Covalent: http://covalent.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|Yes
 +
|-
 +
|DSF: https://dsf.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Duc: https://duc.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|No
 +
|-
 +
|Dud: https://dud.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|Yes
 +
|-
 +
|Dude18: http://dude18.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|No
 +
|-
 +
|Dude: http://dude.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|Yes
 +
|-
 +
|Dudez: http://dudez.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Excipients: http://excipients.docking.org/
 +
|gimel:8093
 +
|
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|Gitlab: https://gitlab.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|No
 +
|-
 +
|HG: https://hg.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|showing wrong website
 +
|-
 +
|IrwinLab: http://irwinlab.compbio.ucsf.edu/
 +
|gimel:5004
 
|Supervisord
 
|Supervisord
 +
|Tau (169.230.26.43)
 +
|Yes
 
|-
 
|-
|Transportal
+
|Khanh: http://khanh.docking.org/
|omega
+
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Metabolite: http://metabolite.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|showing wrong website
 +
|-
 +
|Deepchemworkshop: http://deepchemworkshop.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Prices: http://prices.docking.org/
 +
|gimel:5022
 +
|
 +
|Tau (169.230.26.43)
 +
|No
 +
|-
 +
|Psicquic: http://psicquic.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes (broken???)
 +
|-
 +
|Reactor: http://reactor.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Transporters: http://transporters.ucsf.bkslab.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Sea16: http://sea16.docking.org/
 +
|gimel:8086
 +
|
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|SEC: http://sec.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Smallworld Public: http://sw.docking.org/
 +
|abacus:5020
 
|screen
 
|screen
 +
|Files2 (169.230.75.3)
 +
|Yes
 
|-
 
|-
|SEA
+
|Smallworld Private: http://swp.docking.org/
|gimel2
+
|abacus:8080
 
|screen
 
|screen
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|Smallworld Super Private: http://swc.docking.org/
 +
|abacus:5099
 +
|screen
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|Stats: http://stats.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|No
 +
|-
 +
|Symp: http://symp.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|No
 +
|-
 +
|TLDR http://tldr.docking.org/
 +
|gimel:5011
 +
|Supervisord
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Tool-Selector: http://tool-selector.ucsf.bkslab.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Transportal: http://transportal.docking.org/
 +
|n-9-22 : port 8123
 +
|screen
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Upload: http://upload.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43)
 +
|Yes
 +
|-
 +
|Zinc12: http://zinc12.docking.org/
 +
|
 +
|
 +
|Tau (169.230.26.43, can not be moved to files2)
 +
|Yes
 +
|-
 +
|-
 +
|Zinc15: http://zinc.docking.org/
 +
|
 +
|
 +
|Files2 (169.230.75.3)
 +
|Yes
 +
|-
 +
|Zinc20: http://zinc20.docking.org/
 +
|
 +
|
 +
|Files2 (169.230.75.3)
 +
|Yes
 
|-
 
|-
 
|}
 
|}
  
== Restart Instructions ==
+
== Restart Instructions after UPS==
 +
=== For websites running on Screen ===
 +
* Become khtang on gimel
 +
$ screen -ls
 +
 
 +
21546.SEA (Detached)
 +
23528.transportal (Detached)
 +
22877.conference (Detached)
 +
16132.upload (Detached)
 +
24786.oeb_lib_building (Detached)
 +
4796.ShopAppMol (Detached)
 +
19162.FASTROCS-server (Detached)
 +
 
 +
$ screen -r <screen_id>
 +
 
 +
==== SEA ====
 +
Become www on gimel2
 +
$ cd /nfs/soft/www/apps/seadev/
 +
On bash shell
 +
$ source tools/anaconda2/bin/activate sea16
 +
$ cd work/seaware/seaware-academic
 +
$ make SEAserver-stop-devel
 +
$ make all
 +
$ make SEAserver-start-devel
 +
 
 +
==== Transportal ====
 +
$ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
 +
$ source venv/bin/activate.csh
 +
$ python manage.py runserver 0.0.0.0:8123
 +
 
 +
=== For websites running on Supervisord ===
 +
* Become root on server the website runs on
 +
$ supervisorctl status
 +
$ supervisorctl restart <name>
 +
  i.e
 +
$ supervisorctl restart bks-lab
 +
$ supervisorctl restart tools18
 +
 
 +
 
 +
[[Category : Khanh]]

Revision as of 08:49, 20 October 2020

List of Websites

Last updated on 10/20/2020

Website Machine:Port Run on Hosted in (httpd/conf.d) Working
Amis: https://amis.docking.org/ Files2 (169.230.75.3) Yes
Arthor: https://arthor.docking.org/ n-1-136:8080 Tomcat Files2 (169.230.75.3) Yes
BKSLab: http://www.bkslab.org/ gimel:5002 Supervisord Tau (169.230.26.43) Yes
Blaster: https://blaster.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Cartblanche: https://cartblanche.docking.org/ gimel:5066-5067 Files2 (169.230.75.3) Yes
Covalent: http://covalent.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
DSF: https://dsf.docking.org/ Tau (169.230.26.43) Yes
Duc: https://duc.docking.org/ Tau (169.230.26.43) No
Dud: https://dud.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Dude18: http://dude18.docking.org/ Tau (169.230.26.43) No
Dude: http://dude.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Dudez: http://dudez.docking.org/ Tau (169.230.26.43) Yes
Excipients: http://excipients.docking.org/ gimel:8093 Files2 (169.230.75.3) Yes
Gitlab: https://gitlab.docking.org/ Tau (169.230.26.43) No
HG: https://hg.docking.org/ Tau (169.230.26.43) showing wrong website
IrwinLab: http://irwinlab.compbio.ucsf.edu/ gimel:5004 Supervisord Tau (169.230.26.43) Yes
Khanh: http://khanh.docking.org/ Tau (169.230.26.43) Yes
Metabolite: http://metabolite.docking.org/ Tau (169.230.26.43, can not be moved to files2) showing wrong website
Deepchemworkshop: http://deepchemworkshop.docking.org/ Tau (169.230.26.43) Yes
Prices: http://prices.docking.org/ gimel:5022 Tau (169.230.26.43) No
Psicquic: http://psicquic.docking.org/ Tau (169.230.26.43) Yes (broken???)
Reactor: http://reactor.docking.org/ Tau (169.230.26.43) Yes
Transporters: http://transporters.ucsf.bkslab.org/ Tau (169.230.26.43) Yes
Sea16: http://sea16.docking.org/ gimel:8086 Files2 (169.230.75.3) Yes
SEC: http://sec.docking.org/ Tau (169.230.26.43) Yes
Smallworld Public: http://sw.docking.org/ abacus:5020 screen Files2 (169.230.75.3) Yes
Smallworld Private: http://swp.docking.org/ abacus:8080 screen Files2 (169.230.75.3) Yes
Smallworld Super Private: http://swc.docking.org/ abacus:5099 screen Files2 (169.230.75.3) Yes
Stats: http://stats.docking.org/ Tau (169.230.26.43, can not be moved to files2) No
Symp: http://symp.docking.org/ Tau (169.230.26.43) No
TLDR http://tldr.docking.org/ gimel:5011 Supervisord Tau (169.230.26.43) Yes
Tool-Selector: http://tool-selector.ucsf.bkslab.org/ Tau (169.230.26.43) Yes
Transportal: http://transportal.docking.org/ n-9-22 : port 8123 screen Tau (169.230.26.43) Yes
Upload: http://upload.docking.org/ Tau (169.230.26.43) Yes
Zinc12: http://zinc12.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Zinc15: http://zinc.docking.org/ Files2 (169.230.75.3) Yes
Zinc20: http://zinc20.docking.org/ Files2 (169.230.75.3) Yes

Restart Instructions after UPS

For websites running on Screen

  • Become khtang on gimel
$ screen -ls
21546.SEA	(Detached)
23528.transportal	(Detached)
22877.conference	(Detached)
16132.upload	(Detached)
24786.oeb_lib_building	(Detached)
4796.ShopAppMol	(Detached)
19162.FASTROCS-server	(Detached)
$ screen -r <screen_id>

SEA

Become www on gimel2

$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
$ make SEAserver-stop-devel
$ make all
$ make SEAserver-start-devel

Transportal

$ cd  /mnt/nfs/soft/www/apps/transportal/src/transportal
$ source venv/bin/activate.csh
$ python manage.py runserver 0.0.0.0:8123

For websites running on Supervisord

  • Become root on server the website runs on
$ supervisorctl status
$ supervisorctl restart <name>
  i.e 
$ supervisorctl restart bks-lab
$ supervisorctl restart tools18