Heatmap tool

From DISI
Revision as of 20:44, 3 May 2016 by Frodo (talk | contribs) (asdf)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
source /nfs/soft/python/envs/complete/latest/env.sh 
/nfs/work/teague/Projects/heatmaps/bin-target-actives.py

Quick usage example(s)

  • python bin-target-actives.py OPRD1 -o OPRD1.counts # write 2D matrix of counts to file
  • python bin-target-actives.py OPRD1 -N -o OPRD1.freqs # write 2D matrix of frequencies
  • python bin-target-actives.py OPRD1 -F OPRD1.png # Draw picture (can be used with -o)
  • python bin-target-actives.py OPRD1 --keyvalue # Write tranche-count pairs
  • python bin-target-actives.py DRD2_HUMAN -k orthologs # Use DRD2_HUMAN (ortholog) instead of a gene