DOCK 3.7

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This is the documentation wiki for UCSF DOCK 3.7, which is available at:

The main DOCK3.7 paper, please read & cite: Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.


mol2db2 and mol2db2 format

Ligand Preparation

Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)

ZINC Subset DB2 file locations

Running DOCK

Analyzing DOCK Results

Auto-DUD-E Test Set (external site)

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at


DOCK 3.7 is the latest version of the DOCK 3 series of docking programs used and developed by the Shoichet Laboratory.