DOCK 3.7

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This is the documentation wiki for UCSF DOCK 3.7, which is available at:

The main DOCK3.7 paper, please read & cite: [ | Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.]


mol2db2 and mol2db2 format

Ligand Preparation

Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)

ZINC Subset DB2 file locations

Running DOCK

Analyzing DOCK Results

Auto-DUD-E Test Set (external site)

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at


DOCK 3.7 is the latest version of the DOCK 3 series of docking programs used and developed by the Shoichet Laboratory.