DOCK 3.7
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DOCK 3.7 is available at http://dock.compbio.ucsf.edu/DOCK3.7/. It is the latest version in the DOCK 3 series of docking programs developed and used by the Shoichet Lab. To cite DOCK3.7 paper, please use Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.
Topics
Top level
- Blastermaster - a program prepare input for and then run DOCK 3.7, a molecular docking program.
- Ligand preparation - programs to create dockable databases
Protein preparation for docking
- Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)
Molecular library preparation for docking
- mol2db2 is the program that creates mol2db2 format database files which are read by DOCK 3.7
Molecular docking
- Running DOCK 3.7
- INDOCK 3.7 - file format used by DOCK 3.7
Analysis of Docking Results, including the use of decoys
- Analyzing DOCK Results
- Auto-DUD-E Test Set (external site)
Current cluster information pertaining to using DOCK 3.7
http://i.creativecommons.org/l/by-sa/3.0/88x31.png
This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.