DOCK 3.7: Difference between revisions

From DISI
Jump to navigation Jump to search
No edit summary
No edit summary
Line 8: Line 8:




INDOCK
[[INDOCK 3.7]]


mol2db2 and mol2db2 format
[[mol2db2]] and [[mol2db2 format]]


Ligand Preparation
[[Ligand preparation


Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)
[[Protein Target Preparation]] (Adding Static Waters to the Protein Structure) (Flexible Docking)


ZINC Subset DB2 file locations
[[ZINC Subset DB2 file locations]]


Running DOCK
[[Running DOCK]]


Analyzing DOCK Results
[[Analyzing DOCK Results]]


Auto-DUD-E Test Set (external site)
[Auto-DUD-E Test Set (external site)


{{Template:CC-BY-SA-30}}
{{Template:CC-BY-SA-30}}

Revision as of 21:30, 13 February 2014

This is the documentation wiki for UCSF DOCK 3.7, which is available at:

http://dock.compbio.ucsf.edu/DOCK3.7/

The main DOCK3.7 paper, please read & cite: Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.


INDOCK 3.7

mol2db2 and mol2db2 format

[[Ligand preparation

Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)

ZINC Subset DB2 file locations

Running DOCK

Analyzing DOCK Results

[Auto-DUD-E Test Set (external site)

http://i.creativecommons.org/l/by-sa/3.0/88x31.png

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.

OLD

DOCK 3.7 is the latest version of the DOCK 3 series of docking programs used and developed by the Shoichet Laboratory.