Difference between revisions of "DOCK 3.7"

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* [[So you want to set up a lab]]
 
* [[So you want to set up a lab]]
 
* [[Install DOCK 3.7]]
 
* [[Install DOCK 3.7]]
* [[Getting started with DOCK_3.7]]
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* [[Getting started with DOCK 3.7]]
 
* [[Blastermaster]] - Prepare input for and then run [[DOCK 3.7]].
 
* [[Blastermaster]] - Prepare input for and then run [[DOCK 3.7]].
 
* [[Ligand preparation 3.7]] - Create dockable databases for [[DOCK 3.7]].
 
* [[Ligand preparation 3.7]] - Create dockable databases for [[DOCK 3.7]].

Revision as of 01:23, 13 March 2014

DOCK 3.7 is available at http://dock.compbio.ucsf.edu/DOCK3.7/. It is the latest version in the DOCK 3 series of docking programs developed and used by the Shoichet Lab. To cite the DOCK 3.7 paper, please use Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.

Start here

Protein preparation for docking

Molecular library preparation for docking

Molecular docking

Analysis of Docking Results, including the use of decoys

Current cluster information pertaining to using DOCK 3.7

Previous verisons

DOCK 3.7 is part of the DOCK 3 series. However, it differs substantially from its immediate predecessor DOCK 3.6. Importantly, DOCK 3.6 uses a different format of database files that cannot be read by DOCK 3.7 and vice versa.

http://i.creativecommons.org/l/by-sa/3.0/88x31.png

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.