Difference between revisions of "DOCK 3.7"

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(Molecular docking)
(Molecular docking)
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= Molecular docking =
 
= Molecular docking =
* [[Running DOCK 3.7]]
+
* [[Running docking 3.7]] - JJI currently working on this.
 +
* [[Running DOCK 3.7]] - this seems to be slightly dated.
 
* [[INDOCK 3.7]] - file format used by [[DOCK 3.7]]
 
* [[INDOCK 3.7]] - file format used by [[DOCK 3.7]]
* Reading the [[OUTDOCK 3.7]] file.
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* Interpreting the [[OUTDOCK 3.7]] file.
* [[Running docking 3.7]]
+
  
 
= Analysis of Docking Results, including the use of decoys =
 
= Analysis of Docking Results, including the use of decoys =

Revision as of 11:02, 25 February 2014

DOCK 3.7 is available at http://dock.compbio.ucsf.edu/DOCK3.7/. It is the latest version in the DOCK 3 series of docking programs developed and used by the Shoichet Lab. To cite DOCK3.7 paper, please use Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.

Highest level scripts

Protein preparation for docking

Molecular library preparation for docking

Molecular docking

Analysis of Docking Results, including the use of decoys

Current cluster information pertaining to using DOCK 3.7

Previous verisons

DOCK 3.7 is part of the DOCK 3 series. However, it differs substantially from its immediate predecessor DOCK 3.6. Importantly, DOCK 3.6 uses a different format of database files that cannot be read by DOCK 3.7 and vice versa.

http://i.creativecommons.org/l/by-sa/3.0/88x31.png

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.