Difference between revisions of "DOCK 3.7"

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INDOCK
+
[[INDOCK 3.7]]
  
mol2db2 and mol2db2 format
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[[mol2db2]] and [[mol2db2 format]]
  
Ligand Preparation
+
[[Ligand preparation
  
Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)
+
[[Protein Target Preparation]] (Adding Static Waters to the Protein Structure) (Flexible Docking)
  
ZINC Subset DB2 file locations
+
[[ZINC Subset DB2 file locations]]
  
Running DOCK
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[[Running DOCK]]
  
Analyzing DOCK Results
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[[Analyzing DOCK Results]]
  
Auto-DUD-E Test Set (external site)
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[Auto-DUD-E Test Set (external site)
  
 
{{Template:CC-BY-SA-30}}
 
{{Template:CC-BY-SA-30}}

Revision as of 14:30, 13 February 2014

This is the documentation wiki for UCSF DOCK 3.7, which is available at:

http://dock.compbio.ucsf.edu/DOCK3.7/

The main DOCK3.7 paper, please read & cite: Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.


INDOCK 3.7

mol2db2 and mol2db2 format

[[Ligand preparation

Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)

ZINC Subset DB2 file locations

Running DOCK

Analyzing DOCK Results

[Auto-DUD-E Test Set (external site)

http://i.creativecommons.org/l/by-sa/3.0/88x31.png

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.

OLD

DOCK 3.7 is the latest version of the DOCK 3 series of docking programs used and developed by the Shoichet Laboratory.