Difference between revisions of "DOCK 3.7"

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DOCK 3.7 is the latest version of the [[DOCK 3]] series of docking programs used and developed by the [[Shoichet Laboratory]]. This is also the docking engine behind [[DOCK Blaster]]. It was released in September, 2013.
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This is the documentation wiki for UCSF DOCK 3.7, which is available at:
  
For more details see:
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http://dock.compbio.ucsf.edu/DOCK3.7/
  
*[http://dock.compbio.ucsf.edu/DOCK3.7/ the web page]
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The main DOCK3.7 paper, please read & cite: Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013. Additional citations
*[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 paper]
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= New Features =
 
The new features have not been announced at this time.
 
  
  
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INDOCK
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mol2db2 and mol2db2 format
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Ligand Preparation
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Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)
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ZINC Subset DB2 file locations
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Running DOCK
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Analyzing DOCK Results
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Auto-DUD-E Test Set (external site)
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{{Template:CC-BY-SA-30}}
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{{Template:Coleman}}
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OLD
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DOCK 3.7 is the latest version of the [[DOCK 3]] series of docking programs used and developed by the [[Shoichet Laboratory]]. 
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*[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 paper]
  
 
[[Category:DOCK]]
 
[[Category:DOCK]]

Revision as of 14:17, 13 February 2014

This is the documentation wiki for UCSF DOCK 3.7, which is available at:

http://dock.compbio.ucsf.edu/DOCK3.7/

The main DOCK3.7 paper, please read & cite: Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013. Additional citations


INDOCK

mol2db2 and mol2db2 format

Ligand Preparation

Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)

ZINC Subset DB2 file locations

Running DOCK

Analyzing DOCK Results

Auto-DUD-E Test Set (external site)

http://i.creativecommons.org/l/by-sa/3.0/88x31.png

This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.

OLD

DOCK 3.7 is the latest version of the DOCK 3 series of docking programs used and developed by the Shoichet Laboratory.