Chembl processing protocol: Difference between revisions
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* Exstact the following information from MYSQL into files and bins. | * Exstact the following information from MYSQL into files and bins. | ||
To do this run the following | |||
The "scripts/mysql_export.sh" is a shell script that calls information that has been loaded in to the MySQL data base on SGEHEAD of the BKSLB cluster. | |||
syntax: mysql_export.sh chembl_db_name [F|B|A] | |||
chembl_db_name chemble databas file, for example chembl14 is release | |||
F -- Functional Data: for example, cell assays to efficacy ( life span of a mouse). | |||
B -- Binding Datd: ki, kd, | |||
A -- Affinity: ?? | |||
To do this run the following: | |||
>> scripts/mysql_export.sh chembl14 B | >> scripts/mysql_export.sh chembl14 B | ||
Revision as of 22:57, 19 September 2012
This is intended for internal use for the BKS lab members.
Everytime a new Chembl comes out we need to process it.
- Exstact the following information from MYSQL into files and bins.
The "scripts/mysql_export.sh" is a shell script that calls information that has been loaded in to the MySQL data base on SGEHEAD of the BKSLB cluster.
syntax: mysql_export.sh chembl_db_name [F|B|A] chembl_db_name chemble databas file, for example chembl14 is release F -- Functional Data: for example, cell assays to efficacy ( life span of a mouse). B -- Binding Datd: ki, kd, A -- Affinity: ??
To do this run the following:
>> scripts/mysql_export.sh chembl14 B